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The map label for this gene is hfq [H]

Identifier: 91788465

GI number: 91788465

Start: 2733591

End: 2733860

Strand: Reverse

Name: hfq [H]

Synonym: Bpro_2603

Alternate gene names: 91788465

Gene position: 2733860-2733591 (Counterclockwise)

Preceding gene: 91788466

Following gene: 91788464

Centisome position: 52.57

GC content: 51.11

Gene sequence:

>270_bases
TTGAACACGGAAAATATCGTGAGCAATAACAAAGGTCAGCTGCTGCAGGACCCGTTTCTCAACACCTTGCGTCGGGAGCA
TGTTCCTGTTTCCATTTATCTCGTCAACGGGATCAAATTGCAGGGCCAGATTGAGTCTTTCGATCAATATGTGGTTCTGC
TGCGCAATACCGTGACCCAAATGGTCTACAAGCATGCGATCTCAACCATCGTTCCCGGACGCGCTGTGAGTTTTGCGACC
GGCGAATCCGAAGAAAGCCCCGCCAGCTGA

Upstream 100 bases:

>100_bases
TCCAGATGAAAAGCTCGCACAACCCCTTCACGGACAAGGATTCGGCCTAAAACTACAGGCTGGACGTACCGGCTGTGGTA
AGGTCAAGTTCTATTAACTT

Downstream 100 bases:

>100_bases
GTTCCTATGATGCTCCGGTGAAAACACCAACTCTTGCCCTGCTGGTTGGCGTTGATCTGGGTTTGCCGAACTTTGATGCC
GATCTGCAGGAACTGGGTTT

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVSFAT
GESEESPAS

Sequences:

>Translated_89_residues
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVSFAT
GESEESPAS
>Mature_89_residues
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVSFAT
GESEESPAS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=67, Percent_Identity=85.0746268656716, Blast_Score=123, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9904; Mature: 9904

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQ
CCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHH
MVYKHAISTIVPGRAVSFATGESEESPAS
HHHHHHHHHCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MNTENIVSNNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQ
CCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHH
MVYKHAISTIVPGRAVSFATGESEESPAS
HHHHHHHHHCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA