| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is msrB [H]
Identifier: 91788444
GI number: 91788444
Start: 2704836
End: 2705246
Strand: Direct
Name: msrB [H]
Synonym: Bpro_2582
Alternate gene names: 91788444
Gene position: 2704836-2705246 (Clockwise)
Preceding gene: 91788443
Following gene: 91788445
Centisome position: 52.01
GC content: 58.64
Gene sequence:
>411_bases ATGAGCACCAAAATCCAGAAAACAGACGCCGAATGGAAGGCCTTGCTGGCGGAAAAAGGCGCCGAGCCGGTTGCCTTCGA GGTCACTCGCCACGCCGCCACCGAGCGCCCTTTTACCGGGAAGTATGAGGACAACTATGCGCAGGGAACCTACCGCTGCA TTTGCTGTGACGCCGAGCTTTTTGACTCGTCCAGCAAGTTTGACGCAGGTTGCGGATGGCCCAGTTTCTCCCAGGAATTA AACAAGGGCGCCATTGAAGAGCATGTGGACCGCGCGCACGGCATGACGCGCACCGAAACCGTCTGTGCGAACTGCGGCGC ACATCTGGGCCATGTGTTTCCCGACGGTCCCACCCCGACCGGCTTGCGCTACTGCATGAACTCCGCGTCACTGGACTTTA AGCCAAAGTAA
Upstream 100 bases:
>100_bases TGAACACCCGGGCCATGACAGCTTTTCCGATTTTCCGCCGGACTGGGCTTCATCCATTGAAATAAGTTGCAGTTCGTAAC ACCCTTAACTCAGGATACCC
Downstream 100 bases:
>100_bases TGGGCCCCCACGGTCGCTCACTGCGTGTAGCTCCCTGCCCCCCGAAGGGGCCGCTGCGCCTGCGGCCCGGCAGAGCCGGT TCCGCGGCCCTGGCTTGGAT
Product: protein-methionine-S-oxide reductase
Products: NA
Alternate protein names: Peptide-methionine (R)-S-oxide reductase [H]
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSTKIQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAELFDSSSKFDAGCGWPSFSQEL NKGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDGPTPTGLRYCMNSASLDFKPK
Sequences:
>Translated_136_residues MSTKIQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAELFDSSSKFDAGCGWPSFSQEL NKGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDGPTPTGLRYCMNSASLDFKPK >Mature_135_residues STKIQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAELFDSSSKFDAGCGWPSFSQELN KGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDGPTPTGLRYCMNSASLDFKPK
Specific function: Unknown
COG id: COG0229
COG function: function code O; Conserved domain frequently associated with peptide methionine sulfoxide reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the msrB Met sulfoxide reductase family [H]
Homologues:
Organism=Homo sapiens, GI117606353, Length=134, Percent_Identity=47.7611940298507, Blast_Score=126, Evalue=4e-30, Organism=Homo sapiens, GI301336164, Length=113, Percent_Identity=50.4424778761062, Blast_Score=126, Evalue=5e-30, Organism=Homo sapiens, GI301336162, Length=113, Percent_Identity=50.4424778761062, Blast_Score=126, Evalue=5e-30, Organism=Homo sapiens, GI73089054, Length=113, Percent_Identity=50.4424778761062, Blast_Score=126, Evalue=5e-30, Organism=Homo sapiens, GI37620216, Length=113, Percent_Identity=50.4424778761062, Blast_Score=126, Evalue=5e-30, Organism=Escherichia coli, GI1788077, Length=116, Percent_Identity=53.448275862069, Blast_Score=135, Evalue=9e-34, Organism=Caenorhabditis elegans, GI17553450, Length=128, Percent_Identity=49.21875, Blast_Score=129, Evalue=6e-31, Organism=Caenorhabditis elegans, GI115532676, Length=128, Percent_Identity=49.21875, Blast_Score=128, Evalue=7e-31, Organism=Saccharomyces cerevisiae, GI6319816, Length=135, Percent_Identity=42.2222222222222, Blast_Score=106, Evalue=9e-25, Organism=Drosophila melanogaster, GI221378664, Length=134, Percent_Identity=48.5074626865672, Blast_Score=139, Evalue=6e-34, Organism=Drosophila melanogaster, GI221378662, Length=141, Percent_Identity=46.0992907801418, Blast_Score=138, Evalue=1e-33, Organism=Drosophila melanogaster, GI24645799, Length=134, Percent_Identity=48.5074626865672, Blast_Score=136, Evalue=4e-33, Organism=Drosophila melanogaster, GI45553335, Length=134, Percent_Identity=48.5074626865672, Blast_Score=136, Evalue=4e-33, Organism=Drosophila melanogaster, GI21356369, Length=134, Percent_Identity=48.5074626865672, Blast_Score=136, Evalue=4e-33, Organism=Drosophila melanogaster, GI24645801, Length=145, Percent_Identity=46.2068965517241, Blast_Score=133, Evalue=4e-32, Organism=Drosophila melanogaster, GI24645804, Length=145, Percent_Identity=46.2068965517241, Blast_Score=132, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002579 - InterPro: IPR011057 [H]
Pfam domain/function: PF01641 SelR [H]
EC number: =1.8.4.12 [H]
Molecular weight: Translated: 14957; Mature: 14826
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 5.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKIQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAEL CCCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHH FDSSSKFDAGCGWPSFSQELNKGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDGPTPT HCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCCCCH GLRYCMNSASLDFKPK HHHHHHCCCCCCCCCC >Mature Secondary Structure STKIQKTDAEWKALLAEKGAEPVAFEVTRHAATERPFTGKYEDNYAQGTYRCICCDAEL CCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECHHH FDSSSKFDAGCGWPSFSQELNKGAIEEHVDRAHGMTRTETVCANCGAHLGHVFPDGPTPT HCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCCCCH GLRYCMNSASLDFKPK HHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA