| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fadE25 [H]
Identifier: 91788432
GI number: 91788432
Start: 2689518
End: 2691401
Strand: Reverse
Name: fadE25 [H]
Synonym: Bpro_2570
Alternate gene names: 91788432
Gene position: 2691401-2689518 (Counterclockwise)
Preceding gene: 91788433
Following gene: 91788431
Centisome position: 51.76
GC content: 63.32
Gene sequence:
>1884_bases ATGAGCCTCAGGCCTACCCTTGATTTCCTGCTCTACCAGTGGCTGGATGCCGAGTCGCTGAACCGGCGCGAACGCTTTGC CGACCATTCGCGCGAGACCTTTGATGCGGTGTTTGACACCTGCGAGCGCATTGCCCGCGAAAAATATGCACCGTTCAATC GCACCGTCGATACCCAGGAGCCGCGCTTCGATGGCGAAAAAGTCATCCTCCCGCAGGTCACGCACGATGCCCAGAAGGCC TATGCGGCCTCGGGCATGCTCAGCGCCGCGCAGGACTATGACGTTGGGGGCATGCAGTTGCCCTACACCGTGGAAGCGGC TGCCAATGCTTTTTTTGCCATGGCCTCGGTCAGCATCGGCTCGGGCATGCTAACCACAGGCAATGCCAATTTGCTGATGG TGCACGGCACCGACGCGCAAAAGGACGTGTTTGCCAAAAATGAGTTTTCGGGGCGCTTCTCGGGCACCATGTGCCTGTCG GAGCCGCAGGCCGGTTCGTCCCTCAGTGACGTGGTCACGCGTGCCGTGCCGGATGGCGAGGGCTTTGAAGCCGACCCGCT CGGCCCGCGCTATCGCCTCAAGGGTAACAAGATGTGGATTTCGGCCGGCGAGCATGAGCTGACTGAAAACATCATTCATC TGGTGCTGGCCAAGATACCCGGGCCTGACGGAAAGCTGATCCCGGGCACGCGCGGCATTTCGCTGTTCATCGTGCCCAAG TGGCTGGTGAACGTGGAGAGCCCTCCCCCCGGCCCTCTCCCGGGGGGAGAGGGTGAGAAGGGCAGCGTGAAGGTCACGCT GGGTCCCAGGAACGACGTGGCGTTGGCGGGCCTGAACCACAAGCTCGGCTGGCGCGGCACGATCAACACCCTGCTCAATT TCGGTGAAGGCAAGTACCCGGTGAACGGCGAGGCGGGGGCCATCGGCTACTTGGTCGGCAAGCCGCATGAAGGGCTGCGC TGCATGTTCCACATGATGAACGAGGCGCGCATCGGGGTGGGCACCGCGGCGACCATGCTGGGCATGGCCGGCTACTACGC CAGCCTGGACTATGCCAAAAACCGGCCGCAGGGCCGGCCCGTCGGCCCCGGCGGCAAGGATGCCGCCCAGCCGCAAATCC GTATCATCGAGCATGCCGACGTCAAGCGCATGCTGCTGGCGCAAAAGGCCTACTGCGAAGGCGCGTTGGCACTGGAGCTG TATTGCGCCCGTCTGGTCGACGAACACCATACCGGCGAGCCCCAGGCCGCCGACGACGCGCGCCTGTTGCTGGAAGTGCT GACGCCCATTGCCAAAAGCTGGCCCAGCGAATGGTGCCTGGAGGCCAACTCGCTGGCCATCCAGGTGCACGGCGGCTACG GCTATACGCGTGACTTTCCGGTGGAGCAGTACTGGCGCGACAACCGCCTGAACATGATTCACGAAGGCACCCACGGTATC CAGGCCATGGATTTGCTGGGGCGCAAGGTGCTGATGGAGGGAGGCAGGGGCCTGCAGTTGCTGGGGGAGCGCATCAATGC CACAGTGGAAAAAGCCATGCGGGTGCCGGAGTTGGCCAGCTATGCCCAGGCGCTGGGCACGGCCCTGCAGCAGGTGGAGA GCGCCACCCGGGCCGCCTGGGCCAGCGGCAAGGCTGGCGAGGCCCTCGCCAATGCGGTACCCTATATGCAGGGCTTTGGC CATACTGTGCTGGCTTGGGTCTGGCTCGACGTGGCGCTGGCGGCCTTGGCCGCCGATTCTGCAAAATCGCTAGCTGCCAC TGTGGGCAGATTGGCGGCCACCCGTTATTTTTATCATTACGAGTTACCCAAAATAGAAGCCTGGCTCCGGGTGGCTGAAA CGCGCGACCTGACCTGTGCCGACATGCCTGAGGAGGCGTTTTAA
Upstream 100 bases:
>100_bases AGCTCTGGGCCGTGGCCCAAGGCACGATAGCCCGGCTTCCCGTCAAAGCCAGCCCGACATAACTCCGACCGACATAACCC CGACCTGGAGATCCGTCGCC
Downstream 100 bases:
>100_bases TGGCTTTTTTCAAACCGTCGTCCGCAACCGCTTCCAGCAAATCCGTGGCGCGCCTGCAGGGCCTGATCTGGGTCCTGATT TATGGCGGCCTGCTGACGCT
Product: acyl-CoA dehydrogenase-like protein
Products: 2-butenoyl-CoA; reduced acceptor
Alternate protein names: NA
Number of amino acids: Translated: 627; Mature: 626
Protein sequence:
>627_residues MSLRPTLDFLLYQWLDAESLNRRERFADHSRETFDAVFDTCERIAREKYAPFNRTVDTQEPRFDGEKVILPQVTHDAQKA YAASGMLSAAQDYDVGGMQLPYTVEAAANAFFAMASVSIGSGMLTTGNANLLMVHGTDAQKDVFAKNEFSGRFSGTMCLS EPQAGSSLSDVVTRAVPDGEGFEADPLGPRYRLKGNKMWISAGEHELTENIIHLVLAKIPGPDGKLIPGTRGISLFIVPK WLVNVESPPPGPLPGGEGEKGSVKVTLGPRNDVALAGLNHKLGWRGTINTLLNFGEGKYPVNGEAGAIGYLVGKPHEGLR CMFHMMNEARIGVGTAATMLGMAGYYASLDYAKNRPQGRPVGPGGKDAAQPQIRIIEHADVKRMLLAQKAYCEGALALEL YCARLVDEHHTGEPQAADDARLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGI QAMDLLGRKVLMEGGRGLQLLGERINATVEKAMRVPELASYAQALGTALQQVESATRAAWASGKAGEALANAVPYMQGFG HTVLAWVWLDVALAALAADSAKSLAATVGRLAATRYFYHYELPKIEAWLRVAETRDLTCADMPEEAF
Sequences:
>Translated_627_residues MSLRPTLDFLLYQWLDAESLNRRERFADHSRETFDAVFDTCERIAREKYAPFNRTVDTQEPRFDGEKVILPQVTHDAQKA YAASGMLSAAQDYDVGGMQLPYTVEAAANAFFAMASVSIGSGMLTTGNANLLMVHGTDAQKDVFAKNEFSGRFSGTMCLS EPQAGSSLSDVVTRAVPDGEGFEADPLGPRYRLKGNKMWISAGEHELTENIIHLVLAKIPGPDGKLIPGTRGISLFIVPK WLVNVESPPPGPLPGGEGEKGSVKVTLGPRNDVALAGLNHKLGWRGTINTLLNFGEGKYPVNGEAGAIGYLVGKPHEGLR CMFHMMNEARIGVGTAATMLGMAGYYASLDYAKNRPQGRPVGPGGKDAAQPQIRIIEHADVKRMLLAQKAYCEGALALEL YCARLVDEHHTGEPQAADDARLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGI QAMDLLGRKVLMEGGRGLQLLGERINATVEKAMRVPELASYAQALGTALQQVESATRAAWASGKAGEALANAVPYMQGFG HTVLAWVWLDVALAALAADSAKSLAATVGRLAATRYFYHYELPKIEAWLRVAETRDLTCADMPEEAF >Mature_626_residues SLRPTLDFLLYQWLDAESLNRRERFADHSRETFDAVFDTCERIAREKYAPFNRTVDTQEPRFDGEKVILPQVTHDAQKAY AASGMLSAAQDYDVGGMQLPYTVEAAANAFFAMASVSIGSGMLTTGNANLLMVHGTDAQKDVFAKNEFSGRFSGTMCLSE PQAGSSLSDVVTRAVPDGEGFEADPLGPRYRLKGNKMWISAGEHELTENIIHLVLAKIPGPDGKLIPGTRGISLFIVPKW LVNVESPPPGPLPGGEGEKGSVKVTLGPRNDVALAGLNHKLGWRGTINTLLNFGEGKYPVNGEAGAIGYLVGKPHEGLRC MFHMMNEARIGVGTAATMLGMAGYYASLDYAKNRPQGRPVGPGGKDAAQPQIRIIEHADVKRMLLAQKAYCEGALALELY CARLVDEHHTGEPQAADDARLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGIQ AMDLLGRKVLMEGGRGLQLLGERINATVEKAMRVPELASYAQALGTALQQVESATRAAWASGKAGEALANAVPYMQGFGH TVLAWVWLDVALAALAADSAKSLAATVGRLAATRYFYHYELPKIEAWLRVAETRDLTCADMPEEAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501859, Length=445, Percent_Identity=27.1910112359551, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI4557235, Length=374, Percent_Identity=25.1336898395722, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI76496475, Length=374, Percent_Identity=25.1336898395722, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI7656849, Length=360, Percent_Identity=24.7222222222222, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI226958412, Length=376, Percent_Identity=25.2659574468085, Blast_Score=76, Evalue=8e-14, Organism=Homo sapiens, GI226958414, Length=376, Percent_Identity=25.2659574468085, Blast_Score=76, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17533517, Length=341, Percent_Identity=24.0469208211144, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508101, Length=428, Percent_Identity=23.5981308411215, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI86563383, Length=426, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI86563381, Length=426, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356377, Length=411, Percent_Identity=26.7639902676399, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24646207, Length=471, Percent_Identity=24.8407643312102, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: 1.3.99.2
Molecular weight: Translated: 68203; Mature: 68072
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRPTLDFLLYQWLDAESLNRRERFADHSRETFDAVFDTCERIAREKYAPFNRTVDTQE CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PRFDGEKVILPQVTHDAQKAYAASGMLSAAQDYDVGGMQLPYTVEAAANAFFAMASVSIG CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEECCEEHHHHHHHHHHHHHHHCC SGMLTTGNANLLMVHGTDAQKDVFAKNEFSGRFSGTMCLSEPQAGSSLSDVVTRAVPDGE CCEEEECCCCEEEEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCC GFEADPLGPRYRLKGNKMWISAGEHELTENIIHLVLAKIPGPDGKLIPGTRGISLFIVPK CCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE WLVNVESPPPGPLPGGEGEKGSVKVTLGPRNDVALAGLNHKLGWRGTINTLLNFGEGKYP EEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCC VNGEAGAIGYLVGKPHEGLRCMFHMMNEARIGVGTAATMLGMAGYYASLDYAKNRPQGRP CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC VGPGGKDAAQPQIRIIEHADVKRMLLAQKAYCEGALALELYCARLVDEHHTGEPQAADDA CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHH RLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGI HHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCH QAMDLLGRKVLMEGGRGLQLLGERINATVEKAMRVPELASYAQALGTALQQVESATRAAW HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH ASGKAGEALANAVPYMQGFGHTVLAWVWLDVALAALAADSAKSLAATVGRLAATRYFYHY CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE ELPKIEAWLRVAETRDLTCADMPEEAF CCCHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SLRPTLDFLLYQWLDAESLNRRERFADHSRETFDAVFDTCERIAREKYAPFNRTVDTQE CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PRFDGEKVILPQVTHDAQKAYAASGMLSAAQDYDVGGMQLPYTVEAAANAFFAMASVSIG CCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEECCEEHHHHHHHHHHHHHHHCC SGMLTTGNANLLMVHGTDAQKDVFAKNEFSGRFSGTMCLSEPQAGSSLSDVVTRAVPDGE CCEEEECCCCEEEEECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCC GFEADPLGPRYRLKGNKMWISAGEHELTENIIHLVLAKIPGPDGKLIPGTRGISLFIVPK CCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE WLVNVESPPPGPLPGGEGEKGSVKVTLGPRNDVALAGLNHKLGWRGTINTLLNFGEGKYP EEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCC VNGEAGAIGYLVGKPHEGLRCMFHMMNEARIGVGTAATMLGMAGYYASLDYAKNRPQGRP CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC VGPGGKDAAQPQIRIIEHADVKRMLLAQKAYCEGALALELYCARLVDEHHTGEPQAADDA CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHH RLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGYTRDFPVEQYWRDNRLNMIHEGTHGI HHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCH QAMDLLGRKVLMEGGRGLQLLGERINATVEKAMRVPELASYAQALGTALQQVESATRAAW HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH ASGKAGEALANAVPYMQGFGHTVLAWVWLDVALAALAADSAKSLAATVGRLAATRYFYHY CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE ELPKIEAWLRVAETRDLTCADMPEEAF CCCHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: butanoyl-CoA; acceptor
Specific reaction: butanoyl-CoA + acceptor = 2-butenoyl-CoA + reduced acceptor
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]