| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788410
Identifier: 91788410
GI number: 91788410
Start: 2669261
End: 2670115
Strand: Direct
Name: 91788410
Synonym: Bpro_2548
Alternate gene names: NA
Gene position: 2669261-2670115 (Clockwise)
Preceding gene: 91788409
Following gene: 91788411
Centisome position: 51.33
GC content: 62.11
Gene sequence:
>855_bases ATGAGAAACACACGTGCATTGGTGATGATCGCCGTGGCGGTCGTCCTCGCATTTGGAGCAGTCATCGTGGCTGCCCGCTG GATCAGTGCCCAGGCCTCTGCAGACACCAGCAAGGTTGCGGTGGCAGCGGTTGACATCAGCCTCGGCGCCAGGCTGAGCC CGGAAATGGTTCGCATGGTCGATTGGCCGGCGAGTGCCATGCCGCCCGGCGCCATCACCGATGCCAAGCAGCTCGAAACG CGCGTGACGCGCACCAGCATCCAGCGCGGCGAACCCGTCATGGAAGGCAAGCTTGCGCCGCCCGGCACCCAGGGTGGCCT TTCTGCCGTGGTCGCAGAGGGCAAACGTGCCATGACGGTGCGCGTCAATGATGTGGTGGGCGTAGCCGGGTTTGCCCTGC CGGGCAACTTTGTGGACATCCTGGTCAATACCCAGGATGAACCAGGAAAAGGCGGCGCGGGCAAGGACCAGACCATTTCG AAGATCGTGTTGGAGCGCATTCTGGTGCTGGCCATTGCCCAGGAATCAAGTCGCGACGAAACCAAGCCCAAGGTTGTCAA TGCCGTCACCCTCGAATTGACACCCGACCAGGCAGAAAAACTTGATTTGGCGCGCAGCGTTGGCACCCTCTCGCTGGTTC TGAGGAACCAGGTCGATCCAAACCCGGTGAATACAAAAGGCGCGACCAAGACAACATTGCTTGATGTCAAGGCCCCCGCG CCCGAAGCCCGGCCTGCATCCGCGCCGAAGGCCGCAGTAAAGCCCGCGCCCAAGCGGGTGGTCAGGCCTGCACCCGCCAC CCCAGACCGCGTTGAAGTGATCAAGGGGCTGGAGCGCAGCACCCAACAATTTTAA
Upstream 100 bases:
>100_bases AAAAAACTCATGCCGGAATCATCAACAGCAGTGATGAATAGATGATGAATAGGTGGTGGACCATGTTGGACTATGTTGGA CTAAACAGAGGGGGTGAAAA
Downstream 100 bases:
>100_bases GAAACCGAAGGAGGTATTTGATGAAAACATATTCCACCGGGGCAAGACCGACTTTGTTGGGCGTGGCGCTTGCTGTAGCA GGCGTGATGGCTGCGTCAAC
Product: Flp pilus assembly CpaB
Products: NA
Alternate protein names: Flp Pilus Assembly CpaB; SAF Domain-Containing Protein; Pilus Assembly Protein CpaB; Pilus Assembly Protein; Pilus Assembly Transmembrane Protein; Flp Pilus Assembly Protein; CtpC Protein; Flp Pilus Assembly Protein CpaB-Like Protein; Flp Pilus Assembly CpaB Domain Protein; Flp Pilus Assembly Protein RcpC/CpaB; CpaB Pilus Assembly Protein; Pilus Assembly-Related Exported Protein; Pilus Assembly Domain-Containing Protein; CpaB2 Pilus Assembly Protein; CpaB Family Protein; CpaB Family Flp Pilus Assembly Protein; CpaB2 Flp Pilus Assembly Protein CpaB; Component Of Type IV Pilus; SAF Domain Protein
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MRNTRALVMIAVAVVLAFGAVIVAARWISAQASADTSKVAVAAVDISLGARLSPEMVRMVDWPASAMPPGAITDAKQLET RVTRTSIQRGEPVMEGKLAPPGTQGGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTIS KIVLERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTKGATKTTLLDVKAPA PEARPASAPKAAVKPAPKRVVRPAPATPDRVEVIKGLERSTQQF
Sequences:
>Translated_284_residues MRNTRALVMIAVAVVLAFGAVIVAARWISAQASADTSKVAVAAVDISLGARLSPEMVRMVDWPASAMPPGAITDAKQLET RVTRTSIQRGEPVMEGKLAPPGTQGGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTIS KIVLERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTKGATKTTLLDVKAPA PEARPASAPKAAVKPAPKRVVRPAPATPDRVEVIKGLERSTQQF >Mature_284_residues MRNTRALVMIAVAVVLAFGAVIVAARWISAQASADTSKVAVAAVDISLGARLSPEMVRMVDWPASAMPPGAITDAKQLET RVTRTSIQRGEPVMEGKLAPPGTQGGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTIS KIVLERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTKGATKTTLLDVKAPA PEARPASAPKAAVKPAPKRVVRPAPATPDRVEVIKGLERSTQQF
Specific function: Unknown
COG id: COG3745
COG function: function code U; Flp pilus assembly protein CpaB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29764; Mature: 29764
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNTRALVMIAVAVVLAFGAVIVAARWISAQASADTSKVAVAAVDISLGARLSPEMVRMV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHC DWPASAMPPGAITDAKQLETRVTRTSIQRGEPVMEGKLAPPGTQGGLSAVVAEGKRAMTV CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE RVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVLERILVLAIAQESSRDE EECCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC TKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTKGATKTTLLDVKAPA CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEEECCC PEARPASAPKAAVKPAPKRVVRPAPATPDRVEVIKGLERSTQQF CCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MRNTRALVMIAVAVVLAFGAVIVAARWISAQASADTSKVAVAAVDISLGARLSPEMVRMV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHC DWPASAMPPGAITDAKQLETRVTRTSIQRGEPVMEGKLAPPGTQGGLSAVVAEGKRAMTV CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE RVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVLERILVLAIAQESSRDE EECCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC TKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTKGATKTTLLDVKAPA CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEEECCC PEARPASAPKAAVKPAPKRVVRPAPATPDRVEVIKGLERSTQQF CCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA