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The map label for this gene is yfdE [H]

Identifier: 91788342

GI number: 91788342

Start: 2593330

End: 2594538

Strand: Reverse

Name: yfdE [H]

Synonym: Bpro_2478

Alternate gene names: 91788342

Gene position: 2594538-2593330 (Counterclockwise)

Preceding gene: 91788344

Following gene: 91788341

Centisome position: 49.89

GC content: 64.6

Gene sequence:

>1209_bases
ATGCTGTCGGGTAAATTGATTCTGGATCTCAGTTGGGTGCTAGGCGGTCCTTTCGCAGGCCAGCTTTTGGCCCAACTGGG
CGCGGAAGTGGTAAAGGTCGAGGCACCGGAAGGTGACTATGCGCGCCGTGTGCCACCGGTCTCGCCGCAGCAGGACTCAC
CGTTTTTCCTGTCAGTGAATCGTGGCAAGCGCAGCATTGCCATTGACTTGAAGTCCGCTGACGGCAAGAAGGCATTTGAC
GATCTGGTGCGCCAGGCGGATGCGGTGATCTATGGCTTTGCGCCTGCCGTGCCGGCGCGCCTAGGCCTGGATTTCGCCAC
CCTGAGCGCCATCAACCCGCGCATCGTGGTGGCCCAAATCATTGGCCTGGATGACCAAGGCGAATACGCCAACGCGCCCG
CGTTCGACCTGATGCTTCAGGCGATGTCGGGCGTGATGAGCATCACTGGCGAAGAAGGGGGAAAGCCCGTGCGCGTTGGC
TACCAAGTGGCGGACCTGGCGGGCGGCTTGTACTTGGCGCTCGCCACCACCGCGGCATTGGTGAAGGCCTTGACGACCGG
CAAAGGGGAACAGATCCAGATTTCCCTGTTCGACGCGCAGATCGCCATGCTCACCTGGCAGGCGCAGGGCTGGTTAAGCG
GCGGCCCTGTGCCCCGTGCGACCGGTGCGCGTCACGCGATGATCGCGCCCAGCGACACCTACCGCGCCGCCGACGGCAAG
TGGCTGGCGCTGGCGCCGACTGGAGACGCCTTTTGGCGAAAGCTATGCGACGCCATCGACAGGCCCGAGCTGGCCGACGA
TGCCCGCTTCAATGATGCTGCCGCTCGCATCCGCCATGTGGAGGCACTCACCGGGGAGCTGGCCCGCGCCATCGCGCTGA
AGCCGGCCGCCAAATGGATGGTGATTTTCAGCAGCGCTCGTGTTCCCGCCGCGGTGGTCCAGGGGATTGACGAGGCCTTG
CAACACCCTTTAATTCAGGCGCGCCAGATGGTCGAGCAGGTGGCCAGACCCGATGGCGCGGCCGCCCTTCCCATGCTCGG
CAACCCCTTCAAGTATGCGGACACGCCTGTCCTCGCCTACCCCCCGGCGCTCGGGGCCGACACGGCCGAGGTGTTCGAGC
GCATTGCCGGTTATTCGCCCGAACAGGTCGCGCGACTGGCCAAGTCCCGTGCGATTGCGGTGGCGGCTCAGCATGGAGAC
AAGCCATGA

Upstream 100 bases:

>100_bases
AGCGGGCGTGTCGCTGTGATTGAATACAGCACGGCTTCAGAAAGCGCATTGGCCTTTCAGCCACATGTGAGTAATTTTAT
AAACATGGAATGGAGACATC

Downstream 100 bases:

>100_bases
CGACCCAGCTCGGCAGCGACACTTCGCACGCTGTGCCCGCCTCACGTTTGCTGGAGCTGGTGCGTCGTTTCGCGATTAAC
GTGGTGGCGCCGCTGGCGGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MLSGKLILDLSWVLGGPFAGQLLAQLGAEVVKVEAPEGDYARRVPPVSPQQDSPFFLSVNRGKRSIAIDLKSADGKKAFD
DLVRQADAVIYGFAPAVPARLGLDFATLSAINPRIVVAQIIGLDDQGEYANAPAFDLMLQAMSGVMSITGEEGGKPVRVG
YQVADLAGGLYLALATTAALVKALTTGKGEQIQISLFDAQIAMLTWQAQGWLSGGPVPRATGARHAMIAPSDTYRAADGK
WLALAPTGDAFWRKLCDAIDRPELADDARFNDAAARIRHVEALTGELARAIALKPAAKWMVIFSSARVPAAVVQGIDEAL
QHPLIQARQMVEQVARPDGAAALPMLGNPFKYADTPVLAYPPALGADTAEVFERIAGYSPEQVARLAKSRAIAVAAQHGD
KP

Sequences:

>Translated_402_residues
MLSGKLILDLSWVLGGPFAGQLLAQLGAEVVKVEAPEGDYARRVPPVSPQQDSPFFLSVNRGKRSIAIDLKSADGKKAFD
DLVRQADAVIYGFAPAVPARLGLDFATLSAINPRIVVAQIIGLDDQGEYANAPAFDLMLQAMSGVMSITGEEGGKPVRVG
YQVADLAGGLYLALATTAALVKALTTGKGEQIQISLFDAQIAMLTWQAQGWLSGGPVPRATGARHAMIAPSDTYRAADGK
WLALAPTGDAFWRKLCDAIDRPELADDARFNDAAARIRHVEALTGELARAIALKPAAKWMVIFSSARVPAAVVQGIDEAL
QHPLIQARQMVEQVARPDGAAALPMLGNPFKYADTPVLAYPPALGADTAEVFERIAGYSPEQVARLAKSRAIAVAAQHGD
KP
>Mature_402_residues
MLSGKLILDLSWVLGGPFAGQLLAQLGAEVVKVEAPEGDYARRVPPVSPQQDSPFFLSVNRGKRSIAIDLKSADGKKAFD
DLVRQADAVIYGFAPAVPARLGLDFATLSAINPRIVVAQIIGLDDQGEYANAPAFDLMLQAMSGVMSITGEEGGKPVRVG
YQVADLAGGLYLALATTAALVKALTTGKGEQIQISLFDAQIAMLTWQAQGWLSGGPVPRATGARHAMIAPSDTYRAADGK
WLALAPTGDAFWRKLCDAIDRPELADDARFNDAAARIRHVEALTGELARAIALKPAAKWMVIFSSARVPAAVVQGIDEAL
QHPLIQARQMVEQVARPDGAAALPMLGNPFKYADTPVLAYPPALGADTAEVFERIAGYSPEQVARLAKSRAIAVAAQHGD
KP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=401, Percent_Identity=30.4239401496259, Blast_Score=196, Evalue=5e-50,
Organism=Homo sapiens, GI300863124, Length=323, Percent_Identity=32.8173374613003, Blast_Score=185, Evalue=6e-47,
Organism=Homo sapiens, GI13376042, Length=323, Percent_Identity=30.6501547987616, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI300863126, Length=401, Percent_Identity=25.1870324189526, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=28, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=28, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=30.6513409961686, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=31.1284046692607, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=34.4729344729345, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=27.710843373494, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1786222, Length=389, Percent_Identity=27.5064267352185, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=322, Percent_Identity=24.5341614906832, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=325, Percent_Identity=22.4615384615385, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=32.0707070707071, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24585488, Length=329, Percent_Identity=26.4437689969605, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42550; Mature: 42550

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGKLILDLSWVLGGPFAGQLLAQLGAEVVKVEAPEGDYARRVPPVSPQQDSPFFLSVN
CCCCEEEEEEHHHHCCCHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCCCCCEEEEEC
RGKRSIAIDLKSADGKKAFDDLVRQADAVIYGFAPAVPARLGLDFATLSAINPRIVVAQI
CCCEEEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCHHHHCCCHHHHHCCCCEEEEEEE
IGLDDQGEYANAPAFDLMLQAMSGVMSITGEEGGKPVRVGYQVADLAGGLYLALATTAAL
ECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEECEEHHHHCCHHHHHHHHHHHH
VKALTTGKGEQIQISLFDAQIAMLTWQAQGWLSGGPVPRATGARHAMIAPSDTYRAADGK
HHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
WLALAPTGDAFWRKLCDAIDRPELADDARFNDAAARIRHVEALTGELARAIALKPAAKWM
EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VIFSSARVPAAVVQGIDEALQHPLIQARQMVEQVARPDGAAALPMLGNPFKYADTPVLAY
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEC
PPALGADTAEVFERIAGYSPEQVARLAKSRAIAVAAQHGDKP
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCC
>Mature Secondary Structure
MLSGKLILDLSWVLGGPFAGQLLAQLGAEVVKVEAPEGDYARRVPPVSPQQDSPFFLSVN
CCCCEEEEEEHHHHCCCHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCCCCCEEEEEC
RGKRSIAIDLKSADGKKAFDDLVRQADAVIYGFAPAVPARLGLDFATLSAINPRIVVAQI
CCCEEEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCHHHHCCCHHHHHCCCCEEEEEEE
IGLDDQGEYANAPAFDLMLQAMSGVMSITGEEGGKPVRVGYQVADLAGGLYLALATTAAL
ECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEEECEEHHHHCCHHHHHHHHHHHH
VKALTTGKGEQIQISLFDAQIAMLTWQAQGWLSGGPVPRATGARHAMIAPSDTYRAADGK
HHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
WLALAPTGDAFWRKLCDAIDRPELADDARFNDAAARIRHVEALTGELARAIALKPAAKWM
EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VIFSSARVPAAVVQGIDEALQHPLIQARQMVEQVARPDGAAALPMLGNPFKYADTPVLAY
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEC
PPALGADTAEVFERIAGYSPEQVARLAKSRAIAVAAQHGDKP
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]