| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is imuB [H]
Identifier: 91788254
GI number: 91788254
Start: 2478864
End: 2480294
Strand: Direct
Name: imuB [H]
Synonym: Bpro_2387
Alternate gene names: 91788254
Gene position: 2478864-2480294 (Clockwise)
Preceding gene: 91788253
Following gene: 91788255
Centisome position: 47.67
GC content: 66.18
Gene sequence:
>1431_bases GTGCTGGACGACGCAGTGGCGCAGCGGTTGGTACTGGACGCCGCTGCCATGCAGCGGGCGGTGGCCAGCATGGCGCTGGG CTTTACGCCGCGTGTGGCGCTGGTGGACGAGGCCGTGCTGATGGACGTGACGGGCAGTCTGCGCCTCTTTGGCGGGCTGG CGCAGCTGATGCAGCTGCTGGAGCAACGTTTGGCTGCTTTTTTTGAAGAAAACGGGTTGCAGGCCCAGGTAAAACGGGCG CAAGGCGCGACCTCCTTGATAGCGCTTGGTCGTTTGCGGCTGCAAGATGGACAGACTCAGACTCAGACTGATACCGTGAA AAAGCGCGTGGCCGAGCTGCCCATGCACACCCTGACGGCTGCCCGCCCGCATCTGGGCGTGCTGGAGCGCATTGGCTGCC GCAACTGGGGCGACTTGCTGCGCCTGCCGCGTGACGGTGTGGCCCGGCGCTTTGGCGCGGAGTTGCTGGAGGCGCTGGAC CGCGCCCGCGGCAGCGCACCCGACAACTACGAGTGGCAGGTGCTGCCCGAGCACTTTGAGGAAAAGCTGGAACTCAACGC ACTGGTCACCCACGCCCCCGCGTTGATGGCGGGTGTGGAGCGGCTGCTGGTCCACCTGCACGCCTGGCTGCTCGGGCGCC AGAGCGGACTGTGCGCCCTGAAAATCATCTGGCACCTGGACAAGCGCCGCGACGTGGCGCCCACCGGCGAACTGGAGATC CGCACGGCCCAGCCCGCACAAGACCTTCGCCATGTGGCGCGGCTGGTGGCCGAGCACCTGGCCCAGCAAAAGCTGCCGGC GCCGGTGCACAGCCTGACCTTGCAGTCACTGGCCACCGAGTTGCTGGCTGATTCGGCCGCCGCCACCGGCAGCCTGCTGA TGGAGGCGCGCGAACAGGGTGACAGCGTGGTGGAACTGGTCGAGCGGCTGAGCGCCCGCCTGGGCGATGCGCAGGTGCAG GCCTGGCAGCCTTGCGCGGACCATCGGCCGGAGCTGATGCAACGCTGGGTTCATGCCAGGGGGGCGATTCAATCAATTGC TGCGCATAAAAATTCTGTCCGGGTTGGAGGGTTGAAACGCTCAAGAGATGCTTCAAAAAGCCCTGGTCCGGAGATCAAGA CCGAAGCTTTGTACCCGACCTGGTTGCTGCCCGAGCCGCTCAAGCTGGCCACTGTCGGCAACAGCCCGGTCTACCAGGGC AAGCTGCATCGCCTGACGGGGCCGCAGCGGCTGGAGGCCGCCGAATGGCTGCTGGCCGACAGCGACGCCGCCCGCGACGC CGGGCTGTGTGAGAAGCCGTGGGCGCTTCGTGACTACTTTATTTACCGCAGCCAGCAGGGCGCCTTGCTCTGGATTTACA GCGAGAGGCTGGGCGCCACACCCGAGGCCGCGCGGCAACGCGCTTGGTACCTGCACGGTTTTTTTGCCTGA
Upstream 100 bases:
>100_bases GTGTCGCCTCCTGTCACTTCACCTCAGGGCCCCATCCATGCGCTGCTGGATCGCATTGCACATCTCGACCACCACTGAGC CGGGCCTAGCCGCCCGCCCG
Downstream 100 bases:
>100_bases GGGGAACGCATGTCCTCCTACGTGCTGCCCGATTACGCCGAACTACATGCGCTGAGCAATTTCAGCTTTCAGCGCGGCGC CTCGCATGCTCAGGAGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MLDDAVAQRLVLDAAAMQRAVASMALGFTPRVALVDEAVLMDVTGSLRLFGGLAQLMQLLEQRLAAFFEENGLQAQVKRA QGATSLIALGRLRLQDGQTQTQTDTVKKRVAELPMHTLTAARPHLGVLERIGCRNWGDLLRLPRDGVARRFGAELLEALD RARGSAPDNYEWQVLPEHFEEKLELNALVTHAPALMAGVERLLVHLHAWLLGRQSGLCALKIIWHLDKRRDVAPTGELEI RTAQPAQDLRHVARLVAEHLAQQKLPAPVHSLTLQSLATELLADSAAATGSLLMEAREQGDSVVELVERLSARLGDAQVQ AWQPCADHRPELMQRWVHARGAIQSIAAHKNSVRVGGLKRSRDASKSPGPEIKTEALYPTWLLPEPLKLATVGNSPVYQG KLHRLTGPQRLEAAEWLLADSDAARDAGLCEKPWALRDYFIYRSQQGALLWIYSERLGATPEAARQRAWYLHGFFA
Sequences:
>Translated_476_residues MLDDAVAQRLVLDAAAMQRAVASMALGFTPRVALVDEAVLMDVTGSLRLFGGLAQLMQLLEQRLAAFFEENGLQAQVKRA QGATSLIALGRLRLQDGQTQTQTDTVKKRVAELPMHTLTAARPHLGVLERIGCRNWGDLLRLPRDGVARRFGAELLEALD RARGSAPDNYEWQVLPEHFEEKLELNALVTHAPALMAGVERLLVHLHAWLLGRQSGLCALKIIWHLDKRRDVAPTGELEI RTAQPAQDLRHVARLVAEHLAQQKLPAPVHSLTLQSLATELLADSAAATGSLLMEAREQGDSVVELVERLSARLGDAQVQ AWQPCADHRPELMQRWVHARGAIQSIAAHKNSVRVGGLKRSRDASKSPGPEIKTEALYPTWLLPEPLKLATVGNSPVYQG KLHRLTGPQRLEAAEWLLADSDAARDAGLCEKPWALRDYFIYRSQQGALLWIYSERLGATPEAARQRAWYLHGFFA >Mature_476_residues MLDDAVAQRLVLDAAAMQRAVASMALGFTPRVALVDEAVLMDVTGSLRLFGGLAQLMQLLEQRLAAFFEENGLQAQVKRA QGATSLIALGRLRLQDGQTQTQTDTVKKRVAELPMHTLTAARPHLGVLERIGCRNWGDLLRLPRDGVARRFGAELLEALD RARGSAPDNYEWQVLPEHFEEKLELNALVTHAPALMAGVERLLVHLHAWLLGRQSGLCALKIIWHLDKRRDVAPTGELEI RTAQPAQDLRHVARLVAEHLAQQKLPAPVHSLTLQSLATELLADSAAATGSLLMEAREQGDSVVELVERLSARLGDAQVQ AWQPCADHRPELMQRWVHARGAIQSIAAHKNSVRVGGLKRSRDASKSPGPEIKTEALYPTWLLPEPLKLATVGNSPVYQG KLHRLTGPQRLEAAEWLLADSDAARDAGLCEKPWALRDYFIYRSQQGALLWIYSERLGATPEAARQRAWYLHGFFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 52656; Mature: 52656
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDDAVAQRLVLDAAAMQRAVASMALGFTPRVALVDEAVLMDVTGSLRLFGGLAQLMQLL CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH EQRLAAFFEENGLQAQVKRAQGATSLIALGRLRLQDGQTQTQTDTVKKRVAELPMHTLTA HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH ARPHLGVLERIGCRNWGDLLRLPRDGVARRFGAELLEALDRARGSAPDNYEWQVLPEHFE CCCCHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHH EKLELNALVTHAPALMAGVERLLVHLHAWLLGRQSGLCALKIIWHLDKRRDVAPTGELEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEE RTAQPAQDLRHVARLVAEHLAQQKLPAPVHSLTLQSLATELLADSAAATGSLLMEAREQG EECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSVVELVERLSARLGDAQVQAWQPCADHRPELMQRWVHARGAIQSIAAHKNSVRVGGLKR CHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC SRDASKSPGPEIKTEALYPTWLLPEPLKLATVGNSPVYQGKLHRLTGPQRLEAAEWLLAD CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHCC SDAARDAGLCEKPWALRDYFIYRSQQGALLWIYSERLGATPEAARQRAWYLHGFFA CCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MLDDAVAQRLVLDAAAMQRAVASMALGFTPRVALVDEAVLMDVTGSLRLFGGLAQLMQLL CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH EQRLAAFFEENGLQAQVKRAQGATSLIALGRLRLQDGQTQTQTDTVKKRVAELPMHTLTA HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH ARPHLGVLERIGCRNWGDLLRLPRDGVARRFGAELLEALDRARGSAPDNYEWQVLPEHFE CCCCHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHH EKLELNALVTHAPALMAGVERLLVHLHAWLLGRQSGLCALKIIWHLDKRRDVAPTGELEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEE RTAQPAQDLRHVARLVAEHLAQQKLPAPVHSLTLQSLATELLADSAAATGSLLMEAREQG EECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSVVELVERLSARLGDAQVQAWQPCADHRPELMQRWVHARGAIQSIAAHKNSVRVGGLKR CHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC SRDASKSPGPEIKTEALYPTWLLPEPLKLATVGNSPVYQGKLHRLTGPQRLEAAEWLLAD CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHCC SDAARDAGLCEKPWALRDYFIYRSQQGALLWIYSERLGATPEAARQRAWYLHGFFA CCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA