| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is trxA [H]
Identifier: 91788134
GI number: 91788134
Start: 2351240
End: 2351572
Strand: Reverse
Name: trxA [H]
Synonym: Bpro_2263
Alternate gene names: 91788134
Gene position: 2351572-2351240 (Counterclockwise)
Preceding gene: 91788148
Following gene: 91788133
Centisome position: 45.22
GC content: 55.86
Gene sequence:
>333_bases ATGGCGAGCGAATTGATCAAACATACCACCGATGCCACGTTTGAAGCCGACGTGCTGAAATCTTCAACACCCGTTCTGGT GGACTATTGGGCCGAATGGTGCGGCCCTTGCAAGATGATTGCCCCCATCCTGGACGAAGTGGCCACCGGCTATGACGGCA AGTTGCAGATCGCCAAAATGAATGTCGATGAAAACCGCGACATTCCCGCCAAATTCGGCATTCGTGGCATTCCCACGCTG ATGCTGTTCAAGGACGGCCAGCTGGCAGCCACCAAGGTCGGCGCCATGAGCAAGGCCCAGTTGACCGCATTCATTGACCA GCAACTGGCCTGA
Upstream 100 bases:
>100_bases GCCCATAGCGGCTGCATGAGCGACCCGGTTACTTGCTTTCTGACACAATGACTGCAACTTTAGCCGTATCTAATCTAGTA ACTAGACCAAAGGAGCCGTC
Downstream 100 bases:
>100_bases GCGCCACTGAGACTGGACCTGTCGCCGTGCCATCAGGAACCGGATTACCCCGGCTTCCTGATCCGGCACCGCCTTGATGA CTGCCCCGCGCAACTGCCCT
Product: thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MASELIKHTTDATFEADVLKSSTPVLVDYWAEWCGPCKMIAPILDEVATGYDGKLQIAKMNVDENRDIPAKFGIRGIPTL MLFKDGQLAATKVGAMSKAQLTAFIDQQLA
Sequences:
>Translated_110_residues MASELIKHTTDATFEADVLKSSTPVLVDYWAEWCGPCKMIAPILDEVATGYDGKLQIAKMNVDENRDIPAKFGIRGIPTL MLFKDGQLAATKVGAMSKAQLTAFIDQQLA >Mature_109_residues ASELIKHTTDATFEADVLKSSTPVLVDYWAEWCGPCKMIAPILDEVATGYDGKLQIAKMNVDENRDIPAKFGIRGIPTLM LFKDGQLAATKVGAMSKAQLTAFIDQQLA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=92, Percent_Identity=35.8695652173913, Blast_Score=80, Evalue=3e-16, Organism=Homo sapiens, GI21361657, Length=101, Percent_Identity=31.6831683168317, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI5031973, Length=98, Percent_Identity=29.5918367346939, Blast_Score=62, Evalue=8e-11, Organism=Escherichia coli, GI87082331, Length=108, Percent_Identity=62.962962962963, Blast_Score=150, Evalue=2e-38, Organism=Escherichia coli, GI1788936, Length=92, Percent_Identity=42.3913043478261, Blast_Score=98, Evalue=1e-22, Organism=Escherichia coli, GI87081747, Length=108, Percent_Identity=34.2592592592593, Blast_Score=70, Evalue=3e-14, Organism=Caenorhabditis elegans, GI212646193, Length=97, Percent_Identity=40.2061855670103, Blast_Score=88, Evalue=8e-19, Organism=Caenorhabditis elegans, GI71998175, Length=71, Percent_Identity=45.0704225352113, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17556044, Length=82, Percent_Identity=34.1463414634146, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71980562, Length=62, Percent_Identity=40.3225806451613, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71980565, Length=62, Percent_Identity=40.3225806451613, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17509965, Length=89, Percent_Identity=37.0786516853933, Blast_Score=63, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323072, Length=71, Percent_Identity=45.0704225352113, Blast_Score=70, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6319925, Length=90, Percent_Identity=35.5555555555556, Blast_Score=66, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321648, Length=71, Percent_Identity=42.2535211267606, Blast_Score=66, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324862, Length=104, Percent_Identity=28.8461538461538, Blast_Score=62, Evalue=1e-11, Organism=Drosophila melanogaster, GI24639826, Length=80, Percent_Identity=41.25, Blast_Score=82, Evalue=8e-17, Organism=Drosophila melanogaster, GI28573567, Length=98, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24664269, Length=61, Percent_Identity=40.9836065573771, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI17648013, Length=78, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24583090, Length=78, Percent_Identity=38.4615384615385, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24639068, Length=93, Percent_Identity=27.9569892473118, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11990; Mature: 11859
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASELIKHTTDATFEADVLKSSTPVLVDYWAEWCGPCKMIAPILDEVATGYDGKLQIAKM CCCHHHHHCCCCCEEHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEE NVDENRDIPAKFGIRGIPTLMLFKDGQLAATKVGAMSKAQLTAFIDQQLA CCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure ASELIKHTTDATFEADVLKSSTPVLVDYWAEWCGPCKMIAPILDEVATGYDGKLQIAKM CCHHHHHCCCCCEEHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEE NVDENRDIPAKFGIRGIPTLMLFKDGQLAATKVGAMSKAQLTAFIDQQLA CCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10224002; 10984043 [H]