| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rbsK [H]
Identifier: 91788078
GI number: 91788078
Start: 2301990
End: 2302973
Strand: Reverse
Name: rbsK [H]
Synonym: Bpro_2205
Alternate gene names: 91788078
Gene position: 2302973-2301990 (Counterclockwise)
Preceding gene: 91788079
Following gene: 91788075
Centisome position: 44.29
GC content: 69.51
Gene sequence:
>984_bases GTGAGCCACCCGGATAGCCCCGCCGGCGCCGCAGAGCCCGTAGCAATAACAGCCACCGAAGCGCCTGCCGAGGTGGTCTG CGTGGCCAGCTGGAATGCCGACCTGGTGTCGCACGTGGCACGGCCTATCGCTCGCGGCGAGACGCTGATGGCCAGTGCAT TCAGCATCAGCCCCGGCGGCAAAGGCAGCAATGCGGCCGTCGCTGCCGCCCGCCAGGGCGCGCGCGTAGCGCTCATCGCC CGCATCGGCGACGACGACTTCGGGCGTATGGGCATGACGCTGTGGCATGCCGAAGGCGTCGCCACCGACCATGTCGAGCA CGCCGCCGGCGAATGCAGCGGCGTGGCCCAGATCCTGGTGTATGACGATGGCGACAACAGCATTGCTGTCTGCCCCGGCG CCGGCTCCGGCCTGGGCGCATCGCAGGTACAGGCGGCCCATGGTGTGCTGCGCAGCTGCCGCGTCGTGATGGCGTCCTGC GAGGTGCCTGTAGAGGCCACGCTGCAGGCCTTCCGGCTGGCCCGCGAAGCCGGGGCCATCACCCTGCTGAACCCCGCGCC GGCACGTCCCCTGCCTGAGGAGTTGCTGGCACTGGTCGACGTTCTCACGCCGAACGAAAGCGAGCTGTATCAGCTCGCCG GTGCGGAGCACTCAGGATCGTTGGACGCCGCCGCAAATCACCTGCTGGCAGGCGGAACCGGTGCGGTGCTGGTGACGCTG GGCGCTGCCGGCTGTCGCCTTTATCAAGGCAGACAGACCCCGATCGGCCTGGCCGGACGCAGCATGCCCGTGCTGGACAC CATAGGCGCAGGCGACACCTTCACCGGTACGCTGGCAGCGGCCCTGGCACGCGGCGAGCCACTCGCGAGCGCCATGCAAT GGGCCAATGCCGCGGCGGCCCTGTCAGTGACCAGGCGTGGCGCGATCGACGGCATTCCGGCACGCGCAGACGTTGCGGCC CTGATGAGCCAGGTCGCCAGGTAA
Upstream 100 bases:
>100_bases GGCATTTCCTGGTCATGCTGCTGCTCTTGCTGCTCGCCATGACCTGCTTTCCACAAATTGTGCTGTGGCTGCCGCAAACC ATGGGCTACGGAGGCAAATA
Downstream 100 bases:
>100_bases TCTCCCCGATGCGGGCAGCTGGTTAGCCAATCAGCCCTTTTGCAAAATCCATGCGGCCGCACACACACTTTTTATAGCGC GCAGCACTTCACCTGGGCCT
Product: PfkB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MSHPDSPAGAAEPVAITATEAPAEVVCVASWNADLVSHVARPIARGETLMASAFSISPGGKGSNAAVAAARQGARVALIA RIGDDDFGRMGMTLWHAEGVATDHVEHAAGECSGVAQILVYDDGDNSIAVCPGAGSGLGASQVQAAHGVLRSCRVVMASC EVPVEATLQAFRLAREAGAITLLNPAPARPLPEELLALVDVLTPNESELYQLAGAEHSGSLDAAANHLLAGGTGAVLVTL GAAGCRLYQGRQTPIGLAGRSMPVLDTIGAGDTFTGTLAAALARGEPLASAMQWANAAAALSVTRRGAIDGIPARADVAA LMSQVAR
Sequences:
>Translated_327_residues MSHPDSPAGAAEPVAITATEAPAEVVCVASWNADLVSHVARPIARGETLMASAFSISPGGKGSNAAVAAARQGARVALIA RIGDDDFGRMGMTLWHAEGVATDHVEHAAGECSGVAQILVYDDGDNSIAVCPGAGSGLGASQVQAAHGVLRSCRVVMASC EVPVEATLQAFRLAREAGAITLLNPAPARPLPEELLALVDVLTPNESELYQLAGAEHSGSLDAAANHLLAGGTGAVLVTL GAAGCRLYQGRQTPIGLAGRSMPVLDTIGAGDTFTGTLAAALARGEPLASAMQWANAAAALSVTRRGAIDGIPARADVAA LMSQVAR >Mature_326_residues SHPDSPAGAAEPVAITATEAPAEVVCVASWNADLVSHVARPIARGETLMASAFSISPGGKGSNAAVAAARQGARVALIAR IGDDDFGRMGMTLWHAEGVATDHVEHAAGECSGVAQILVYDDGDNSIAVCPGAGSGLGASQVQAAHGVLRSCRVVMASCE VPVEATLQAFRLAREAGAITLLNPAPARPLPEELLALVDVLTPNESELYQLAGAEHSGSLDAAANHLLAGGTGAVLVTLG AAGCRLYQGRQTPIGLAGRSMPVLDTIGAGDTFTGTLAAALARGEPLASAMQWANAAAALSVTRRGAIDGIPARADVAAL MSQVAR
Specific function: Ribose metabolism; first step. [C]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Homo sapiens, GI11545855, Length=295, Percent_Identity=34.5762711864407, Blast_Score=145, Evalue=7e-35, Organism=Escherichia coli, GI1790193, Length=305, Percent_Identity=37.7049180327869, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI87081971, Length=311, Percent_Identity=27.9742765273312, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI87082343, Length=291, Percent_Identity=32.9896907216495, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788491, Length=289, Percent_Identity=24.5674740484429, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17532905, Length=296, Percent_Identity=33.7837837837838, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI20128807, Length=304, Percent_Identity=37.5, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI24583886, Length=302, Percent_Identity=28.1456953642384, Blast_Score=107, Evalue=8e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR011877 - InterPro: IPR002139 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.15 [H]
Molecular weight: Translated: 32859; Mature: 32727
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHPDSPAGAAEPVAITATEAPAEVVCVASWNADLVSHVARPIARGETLMASAFSISPGG CCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCC KGSNAAVAAARQGARVALIARIGDDDFGRMGMTLWHAEGVATDHVEHAAGECSGVAQILV CCCCHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE YDDGDNSIAVCPGAGSGLGASQVQAAHGVLRSCRVVMASCEVPVEATLQAFRLAREAGAI EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE TLLNPAPARPLPEELLALVDVLTPNESELYQLAGAEHSGSLDAAANHLLAGGTGAVLVTL EEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEE GAAGCRLYQGRQTPIGLAGRSMPVLDTIGAGDTFTGTLAAALARGEPLASAMQWANAAAA CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH LSVTRRGAIDGIPARADVAALMSQVAR HHHHHCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SHPDSPAGAAEPVAITATEAPAEVVCVASWNADLVSHVARPIARGETLMASAFSISPGG CCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCC KGSNAAVAAARQGARVALIARIGDDDFGRMGMTLWHAEGVATDHVEHAAGECSGVAQILV CCCCHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE YDDGDNSIAVCPGAGSGLGASQVQAAHGVLRSCRVVMASCEVPVEATLQAFRLAREAGAI EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE TLLNPAPARPLPEELLALVDVLTPNESELYQLAGAEHSGSLDAAANHLLAGGTGAVLVTL EEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEE GAAGCRLYQGRQTPIGLAGRSMPVLDTIGAGDTFTGTLAAALARGEPLASAMQWANAAAA CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH LSVTRRGAIDGIPARADVAALMSQVAR HHHHHCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]