Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91787948

Identifier: 91787948

GI number: 91787948

Start: 2158553

End: 2160151

Strand: Direct

Name: 91787948

Synonym: Bpro_2073

Alternate gene names: NA

Gene position: 2158553-2160151 (Clockwise)

Preceding gene: 91787946

Following gene: 91787949

Centisome position: 41.51

GC content: 68.42

Gene sequence:

>1599_bases
ATGCGCATCACGCCCGTCGCGGCTGCAGCCGCACTCACCTTGGTTCTCGCCGGTCCGTCGCTCGGCCACGAAGTGGAAGA
GGGCAAAGGCCAGCTCGGCAAGGTCGCTTTTGCCAACAGTTGCGACGCCAAGGTGCAGAAGGAGTTGCAACGCGCCGTCG
CGATGCTGCATTCGTTCTGGTTCTCGGCCGGCGAGAAGGCATTCCGCCACGTGCTGGAGGACGATCCCGCCTGCGGCGTC
GCCACCTTCGGCATCGCGGCGATCTTGATGAACAACCCGCTCGCCGGGCAAGGCGCATCGCCGAAGGCCGCCGAGACTGC
CGCGGCGGCGATCGAACAAGGCCGGCGCGTGGGCGCCAAGACGCAGCGCGAACGCGACTACATCGAGGCCGTCGCCAGCT
ATTACGCCGACTTTGCCAACAAGCCTGAACGAGCGCGACAGGCTGCGCGCGCTCAGGCCTTCGAGGCATTGGCAGCGAAA
TACCCCGACGATGACGAGGCGCAGATCTTCGCGGCTCTCTACATCGCCGGCACCCAGTCGCAGGCCGACCAGACCTACGC
AGCCTACTTGAAGGCAGCCACAGTGCTGGAGAAGCAGTTAGTCAAATATCCAGACCATCCGGGCGTCGCGCATTACCTGA
TCCACAGCTACGACGCGCCGCCGATCGCCGCCAAGGGCCTGCCTGCCGCACGCCGCTATGCGGGCATCGCGCCCGACGCC
CCGCATGCCTTACACATGCCCTCGCACATCTTCACTCGCGTGGGAGCCTGGACGGACTCGGTGAGCACGAACCGCCGATC
GGCTGACGTGGCAAAGAAGGATCCCGCCGACGCCGCGAACGCCTACCATGCCGCGGACTACATGGTCTATGCCCAGCTTC
AGCTCGGCCGCGACCAGGAAGCACGGCGCGTGATGGAAGAATTCAAGAGCGCCGACGGCGCCAAGGTGGCGCAGTTCGCG
GGCCCTTATGCCGCGGCGGCCATGCCTGCGCGGCTGGCGCTCGAACGGGGCGACTGGGCCGCCGCGGCGCAGCTCGTGCC
GCAAGGCACGGCCTTCGCTCATTGCGAGGCCATTACGAGTTTCTCGCGCGCGCTCGGCGCCGCACGTATGGGCGACGTGG
CCGCGGCCGAGCAGGAGGCGCAGCGCCTGGAGGCACAGCACAAGGCGCTCGTCGAAGCCAAGAACAACTACTGGGCCACC
GAGGTCGAGGTCCAGCGCATCGCCGCCGCGGCCTGGATCGCCAAGGCCAAGGGCCAGCACGACGAGGCCCTGCGACTGAT
GCGCGCCGCAGCCGACATGGAGGATCGCAGCGAGAAACACATCGTCACGCCCGGCCGCGTCGTGCCGGCGCGCGAACTGC
TGGGCGAGATGCTGATGGATCTCAAGCAGCCGGCCGCCGCGCTCAAGGAGTTCGAGCAGTCGCAAGTGCGCGAGCCCAAC
CGCCTGCGCGGCTATGCCGGCGCGGCCGCCGCCGCCGACGCAGCGGGCCGGCGCGACAGGGCGCGCGCGCACTACGCCAG
ACTGGTCGAACTCACGCGCGACGCCGACACCCCCCTGCCCGAGATCACGCGCGCCAAGACCTACCTGGCGAGCCGATGA

Upstream 100 bases:

>100_bases
CGCTGCTTGCATTCGGTGGTGGCCGGGCGCACAATCGTCGCGCCAGGCGGTTCGCGGGGCCTTCCCACGAGCCGTTCTGC
GCCGACACAAGGAGCCCACC

Downstream 100 bases:

>100_bases
ATCGCTTTCGGCGAGCGGGCCTCGCGGCAGCAGCCCTGGCGCTGCTGCTGCCGCTGTCGCAAAGGGGCGGCGCGGTGCAG
TCGGAAGACTCCGACGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide Domain-Containing Protein; TPR Repeat Protein; Tetratricopeptide Region; Tetratricopeptide Domain Protein; Redoxin Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV
ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK
YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA
PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA
GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT
EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN
RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR

Sequences:

>Translated_532_residues
MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV
ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK
YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA
PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA
GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT
EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN
RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR
>Mature_532_residues
MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV
ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK
YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA
PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA
GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT
EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN
RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57273; Mature: 57273

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50293 TPR_REGION ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFW
CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
FSAGEKAFRHVLEDDPACGVATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAK
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
TQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAKYPDDDEAQIFAALYIAGTQS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHEECCCC
QADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCC
PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQE
CCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHCCCCHH
ARRVMEEFKSADGAKVAQFAGPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITS
HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
FSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWATEVEVQRIAAAAWIAKAKGQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH
DEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN
HHHHHHHHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR
HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFW
CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
FSAGEKAFRHVLEDDPACGVATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAK
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
TQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAKYPDDDEAQIFAALYIAGTQS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHEECCCC
QADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCC
PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQE
CCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHCCCCHH
ARRVMEEFKSADGAKVAQFAGPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITS
HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
FSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWATEVEVQRIAAAAWIAKAKGQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH
DEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN
HHHHHHHHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR
HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA