| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787948
Identifier: 91787948
GI number: 91787948
Start: 2158553
End: 2160151
Strand: Direct
Name: 91787948
Synonym: Bpro_2073
Alternate gene names: NA
Gene position: 2158553-2160151 (Clockwise)
Preceding gene: 91787946
Following gene: 91787949
Centisome position: 41.51
GC content: 68.42
Gene sequence:
>1599_bases ATGCGCATCACGCCCGTCGCGGCTGCAGCCGCACTCACCTTGGTTCTCGCCGGTCCGTCGCTCGGCCACGAAGTGGAAGA GGGCAAAGGCCAGCTCGGCAAGGTCGCTTTTGCCAACAGTTGCGACGCCAAGGTGCAGAAGGAGTTGCAACGCGCCGTCG CGATGCTGCATTCGTTCTGGTTCTCGGCCGGCGAGAAGGCATTCCGCCACGTGCTGGAGGACGATCCCGCCTGCGGCGTC GCCACCTTCGGCATCGCGGCGATCTTGATGAACAACCCGCTCGCCGGGCAAGGCGCATCGCCGAAGGCCGCCGAGACTGC CGCGGCGGCGATCGAACAAGGCCGGCGCGTGGGCGCCAAGACGCAGCGCGAACGCGACTACATCGAGGCCGTCGCCAGCT ATTACGCCGACTTTGCCAACAAGCCTGAACGAGCGCGACAGGCTGCGCGCGCTCAGGCCTTCGAGGCATTGGCAGCGAAA TACCCCGACGATGACGAGGCGCAGATCTTCGCGGCTCTCTACATCGCCGGCACCCAGTCGCAGGCCGACCAGACCTACGC AGCCTACTTGAAGGCAGCCACAGTGCTGGAGAAGCAGTTAGTCAAATATCCAGACCATCCGGGCGTCGCGCATTACCTGA TCCACAGCTACGACGCGCCGCCGATCGCCGCCAAGGGCCTGCCTGCCGCACGCCGCTATGCGGGCATCGCGCCCGACGCC CCGCATGCCTTACACATGCCCTCGCACATCTTCACTCGCGTGGGAGCCTGGACGGACTCGGTGAGCACGAACCGCCGATC GGCTGACGTGGCAAAGAAGGATCCCGCCGACGCCGCGAACGCCTACCATGCCGCGGACTACATGGTCTATGCCCAGCTTC AGCTCGGCCGCGACCAGGAAGCACGGCGCGTGATGGAAGAATTCAAGAGCGCCGACGGCGCCAAGGTGGCGCAGTTCGCG GGCCCTTATGCCGCGGCGGCCATGCCTGCGCGGCTGGCGCTCGAACGGGGCGACTGGGCCGCCGCGGCGCAGCTCGTGCC GCAAGGCACGGCCTTCGCTCATTGCGAGGCCATTACGAGTTTCTCGCGCGCGCTCGGCGCCGCACGTATGGGCGACGTGG CCGCGGCCGAGCAGGAGGCGCAGCGCCTGGAGGCACAGCACAAGGCGCTCGTCGAAGCCAAGAACAACTACTGGGCCACC GAGGTCGAGGTCCAGCGCATCGCCGCCGCGGCCTGGATCGCCAAGGCCAAGGGCCAGCACGACGAGGCCCTGCGACTGAT GCGCGCCGCAGCCGACATGGAGGATCGCAGCGAGAAACACATCGTCACGCCCGGCCGCGTCGTGCCGGCGCGCGAACTGC TGGGCGAGATGCTGATGGATCTCAAGCAGCCGGCCGCCGCGCTCAAGGAGTTCGAGCAGTCGCAAGTGCGCGAGCCCAAC CGCCTGCGCGGCTATGCCGGCGCGGCCGCCGCCGCCGACGCAGCGGGCCGGCGCGACAGGGCGCGCGCGCACTACGCCAG ACTGGTCGAACTCACGCGCGACGCCGACACCCCCCTGCCCGAGATCACGCGCGCCAAGACCTACCTGGCGAGCCGATGA
Upstream 100 bases:
>100_bases CGCTGCTTGCATTCGGTGGTGGCCGGGCGCACAATCGTCGCGCCAGGCGGTTCGCGGGGCCTTCCCACGAGCCGTTCTGC GCCGACACAAGGAGCCCACC
Downstream 100 bases:
>100_bases ATCGCTTTCGGCGAGCGGGCCTCGCGGCAGCAGCCCTGGCGCTGCTGCTGCCGCTGTCGCAAAGGGGCGGCGCGGTGCAG TCGGAAGACTCCGACGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Domain-Containing Protein; TPR Repeat Protein; Tetratricopeptide Region; Tetratricopeptide Domain Protein; Redoxin Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR
Sequences:
>Translated_532_residues MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR >Mature_532_residues MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFWFSAGEKAFRHVLEDDPACGV ATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAKTQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAK YPDDDEAQIFAALYIAGTQSQADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQEARRVMEEFKSADGAKVAQFA GPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITSFSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWAT EVEVQRIAAAAWIAKAKGQHDEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57273; Mature: 57273
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: PS50293 TPR_REGION ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFW CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH FSAGEKAFRHVLEDDPACGVATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH TQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAKYPDDDEAQIFAALYIAGTQS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHEECCCC QADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCC PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQE CCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHCCCCHH ARRVMEEFKSADGAKVAQFAGPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITS HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH FSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWATEVEVQRIAAAAWIAKAKGQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH DEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN HHHHHHHHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MRITPVAAAAALTLVLAGPSLGHEVEEGKGQLGKVAFANSCDAKVQKELQRAVAMLHSFW CCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH FSAGEKAFRHVLEDDPACGVATFGIAAILMNNPLAGQGASPKAAETAAAAIEQGRRVGAK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH TQRERDYIEAVASYYADFANKPERARQAARAQAFEALAAKYPDDDEAQIFAALYIAGTQS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHEECCCC QADQTYAAYLKAATVLEKQLVKYPDHPGVAHYLIHSYDAPPIAAKGLPAARRYAGIAPDA HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCC PHALHMPSHIFTRVGAWTDSVSTNRRSADVAKKDPADAANAYHAADYMVYAQLQLGRDQE CCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHCCCCHH ARRVMEEFKSADGAKVAQFAGPYAAAAMPARLALERGDWAAAAQLVPQGTAFAHCEAITS HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH FSRALGAARMGDVAAAEQEAQRLEAQHKALVEAKNNYWATEVEVQRIAAAAWIAKAKGQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH DEALRLMRAAADMEDRSEKHIVTPGRVVPARELLGEMLMDLKQPAAALKEFEQSQVREPN HHHHHHHHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RLRGYAGAAAAADAAGRRDRARAHYARLVELTRDADTPLPEITRAKTYLASR HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA