| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is phaZ1 [H]
Identifier: 91787941
GI number: 91787941
Start: 2146073
End: 2147152
Strand: Reverse
Name: phaZ1 [H]
Synonym: Bpro_2065
Alternate gene names: 91787941
Gene position: 2147152-2146073 (Counterclockwise)
Preceding gene: 91787942
Following gene: 91787934
Centisome position: 41.29
GC content: 69.63
Gene sequence:
>1080_bases ATGACCCCTGATTTCCAACGCCTGATGAAGGATGCCGCCCAGCTCACCCGTGCCGGTGACCTGCAAGCCGCCACCGCCGC GATCCAGGCCGCGCTGGGCGGCGGTGTGGCTGCCGCAGCCGCCGCCGCACAAGACCTGCGCGACGTGATTGATGTTGCGG CGCGCGAGGTGCCTGACGTTGCGCGGACATTTGACGACGAGTCCCCCTCCGCACCGGCCGGCAACGCTCCCGACGCCGGC CGCTTCATTGCCGGCAGCCATGGCGACGCTTCGGGTCACCGCGACTTCAAACTTTATATTCCGCCGGGCGCCGGCGAGCG CCCGCTGCCGCTGGTTGTGATGCTGCACGGCTGCACGCAGAACCCGGACGATTTTGCGGCGGGCACCGCCATGAACGATG CGGCGCTGGCGCAGGGCTTTTTTGTGCTGTACCCGGCACAGTCGCAGCAGATGAATCCGCAGCGTTGCTGGAACTGGTTC AAACACACCCACCAGGCCCGCGGACGCGGCGAGCCGGCGCTGCTGGCGGGCATGACGCGCGAGGTGATGGCGCGCCATGC GATTGACCCGAGGCGCGTTTATGTGGCCGGCCTGTCCGCGGGTGGCGCCATGGCCGCCATTTTGGGCGACGCCTATCCTG ACCTGTATGCCGCGGTGGGCGTGCACTCGGGGCTGGCGGCCGGCATCGCGACAGACCTGCCGTCGGCGCTGGGCGCGATG AGGGGCGGTGGCACCACCACCCGTGCGACCGCCAGCGGCGTGGCGACCATCGTCTTTCACGGCGACGCCGACACCACGGT GCATCCGGGCAACGGCGAGCAGGTCATCACGGCCAGCGTTGGCACGGCGGCCGCTGTCGAAGTCGAACACCTGAAAGGAG CTGACGGCCGCGCGACCACGCGCCGCGTGCACCGCGCGAGCGATGGCACGGTGGTGGCCGAGCACTGGCTGGTGCACGGC ACATCGCACGCCTGGTCAGGCGGCAGCGCCAACGGCTCGTACACCGACGCCCGGGGGCCAGATGCCAGCGCCGAGATGGT GCGGTTTTTTCTGGAGCATCCGCACCGGCAGGCCCACTAA
Upstream 100 bases:
>100_bases CATGCGAGCCCCGCCGTGAAAGCCGCGCTCGTGCAGCGTATCCGCTAATACAGCGAATACAGCGAGTCAACGAATCAACG AATCGAACTGAAAGAAGCTG
Downstream 100 bases:
>100_bases CTCATTAACGGCCCGAGCGCACCGGGTTCAGCACAAAATCATATTCCAGCAGATAGTCGCCATCGGGTTGCCTCACCCAA TCTGCCACCAGCGACTGGCG
Product: esterase, PHB depolymerase
Products: NA
Alternate protein names: PHA depolymerase; PHB depolymerase [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MTPDFQRLMKDAAQLTRAGDLQAATAAIQAALGGGVAAAAAAAQDLRDVIDVAAREVPDVARTFDDESPSAPAGNAPDAG RFIAGSHGDASGHRDFKLYIPPGAGERPLPLVVMLHGCTQNPDDFAAGTAMNDAALAQGFFVLYPAQSQQMNPQRCWNWF KHTHQARGRGEPALLAGMTREVMARHAIDPRRVYVAGLSAGGAMAAILGDAYPDLYAAVGVHSGLAAGIATDLPSALGAM RGGGTTTRATASGVATIVFHGDADTTVHPGNGEQVITASVGTAAAVEVEHLKGADGRATTRRVHRASDGTVVAEHWLVHG TSHAWSGGSANGSYTDARGPDASAEMVRFFLEHPHRQAH
Sequences:
>Translated_359_residues MTPDFQRLMKDAAQLTRAGDLQAATAAIQAALGGGVAAAAAAAQDLRDVIDVAAREVPDVARTFDDESPSAPAGNAPDAG RFIAGSHGDASGHRDFKLYIPPGAGERPLPLVVMLHGCTQNPDDFAAGTAMNDAALAQGFFVLYPAQSQQMNPQRCWNWF KHTHQARGRGEPALLAGMTREVMARHAIDPRRVYVAGLSAGGAMAAILGDAYPDLYAAVGVHSGLAAGIATDLPSALGAM RGGGTTTRATASGVATIVFHGDADTTVHPGNGEQVITASVGTAAAVEVEHLKGADGRATTRRVHRASDGTVVAEHWLVHG TSHAWSGGSANGSYTDARGPDASAEMVRFFLEHPHRQAH >Mature_358_residues TPDFQRLMKDAAQLTRAGDLQAATAAIQAALGGGVAAAAAAAQDLRDVIDVAAREVPDVARTFDDESPSAPAGNAPDAGR FIAGSHGDASGHRDFKLYIPPGAGERPLPLVVMLHGCTQNPDDFAAGTAMNDAALAQGFFVLYPAQSQQMNPQRCWNWFK HTHQARGRGEPALLAGMTREVMARHAIDPRRVYVAGLSAGGAMAAILGDAYPDLYAAVGVHSGLAAGIATDLPSALGAMR GGGTTTRATASGVATIVFHGDADTTVHPGNGEQVITASVGTAAAVEVEHLKGADGRATTRRVHRASDGTVVAEHWLVHGT SHAWSGGSANGSYTDARGPDASAEMVRFFLEHPHRQAH
Specific function: Specific for poly(hydroxyalkanoic acid) consisting of monomers of four or five carbon atoms and for P- nitrophenylbutyrate as substrates [H]
COG id: COG3509
COG function: function code Q; Poly(3-hydroxybutyrate) depolymerase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Lipase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010126 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37156; Mature: 37025
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPDFQRLMKDAAQLTRAGDLQAATAAIQAALGGGVAAAAAAAQDLRDVIDVAAREVPDV CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH ARTFDDESPSAPAGNAPDAGRFIAGSHGDASGHRDFKLYIPPGAGERPLPLVVMLHGCTQ HHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCC NPDDFAAGTAMNDAALAQGFFVLYPAQSQQMNPQRCWNWFKHTHQARGRGEPALLAGMTR CCCHHHCCCCCCHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH EVMARHAIDPRRVYVAGLSAGGAMAAILGDAYPDLYAAVGVHSGLAAGIATDLPSALGAM HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGGGTTTRATASGVATIVFHGDADTTVHPGNGEQVITASVGTAAAVEVEHLKGADGRATT CCCCCCCEEECCCEEEEEEECCCCCEEECCCCCEEEEEECCCEEEEEHHHHCCCCCCHHH RRVHRASDGTVVAEHWLVHGTSHAWSGGSANGSYTDARGPDASAEMVRFFLEHPHRQAH HHHHHCCCCCEEEEEHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TPDFQRLMKDAAQLTRAGDLQAATAAIQAALGGGVAAAAAAAQDLRDVIDVAAREVPDV CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH ARTFDDESPSAPAGNAPDAGRFIAGSHGDASGHRDFKLYIPPGAGERPLPLVVMLHGCTQ HHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCC NPDDFAAGTAMNDAALAQGFFVLYPAQSQQMNPQRCWNWFKHTHQARGRGEPALLAGMTR CCCHHHCCCCCCHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH EVMARHAIDPRRVYVAGLSAGGAMAAILGDAYPDLYAAVGVHSGLAAGIATDLPSALGAM HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGGGTTTRATASGVATIVFHGDADTTVHPGNGEQVITASVGTAAAVEVEHLKGADGRATT CCCCCCCEEECCCEEEEEEECCCCCEEECCCCCEEEEEECCCEEEEEHHHHCCCCCCHHH RRVHRASDGTVVAEHWLVHGTSHAWSGGSANGSYTDARGPDASAEMVRFFLEHPHRQAH HHHHHCCCCCEEEEEHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8269961 [H]