| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lon [H]
Identifier: 91787908
GI number: 91787908
Start: 2106179
End: 2108608
Strand: Direct
Name: lon [H]
Synonym: Bpro_2032
Alternate gene names: 91787908
Gene position: 2106179-2108608 (Clockwise)
Preceding gene: 91787907
Following gene: 91787909
Centisome position: 40.5
GC content: 57.74
Gene sequence:
>2430_bases ATGTCCGGACAAACTTCATTGCCTTCCACCCCCATCGATTTGCCACTGCTGCCTCTGCGGGACGTGGTGGTCTTTCCCCA CATGGTCATTCCGCTGTTTGTGGGGCGGCCCAAGAGCATCAAGGCGCTTGAGTCGGCCATGGAGGCCGAACGCCGCATCA TGCTGGTGGCCCAAAAGGCCGCAGCCAAGGACGAGCCCTCGGTCGAGGACATGTTCGAGGTGGGCTGTGTGGCCACTATC CTGCAGTTGCTCAAGCTGCCTGACGGTACGGTCAAGGTCCTGGTGGAAGGGCAGCAGCGCGCCAGGGTCAATAAAATCGA GGACGGCGAACAGCACTTCACCGCCAATGTCACCCCTGTTGAGCCCACCGTGGTGGTTGTGGGTGACAAGGGCAGCGAGA TTGAAGCCTTGCGCCGCGCCGTGATGCAGCAGTTTGATCATTACGTCAAACTCAACAAGAAAATTCCGCCGGAAATCCTC ACCTCGATTTCCAGCATCGATGACGCGGGCCGGCTGGCCGATACGATCGCGGCTCACCTGCCGCTCAAACTCGATGCCAA GCAGATCATTCTGGATCTCGACAACGTCAAGTTGCGGCTCGAAAATCTTTACGAGCAGCTTGAGCGCGAAGTGGACATCC TCAATGTGGACAAAAAAATCCGTGGCCGTGTCAAGCGCCAGATGGAAAAGAACCAGCGGGACTTCTACCTCAATGAGCAG GTGAAAGCCATCCAGAAGGAACTGGGTGAAGGCGAAGAAGGCGCTGACATCGAAGAGATCGAGAAGAAGATCAAGTCGGC CAAGATGCCGCAGGATGCACGCAAAAAAGCCGAAAGCGAGCTCAAGAAACTCAAGCTGATGTCACCGATGTCGGCTGAAG CGACTGTGGTGCGTACCTACATCGATGTACTGACCGGTTTGCCGTGGAGCAAAAAGACCAAGATCAAGCACGATCTGGTC AACGCCGAGAATGTGCTCAATGAAGACCACTATGGCCTTGAAAAAGTCAAGGACCGCATTGTGGAATACCTCGCGGTGCA ACAGCGGGTTGACAAGCTCAAGGCCCCGATTCTTTGCCTGGTGGGCCCTCCTGGTGTGGGCAAGACTTCGTTGGGCCAGT CCATCGCCAAAGCGACGGGGCGCAAATACGTACGCATGGCGCTGGGCGGCATGCGTGATGAGGCGGAAATTCGTGGGCAC CGCCGTACCTACATTGGCGCCTTGCCCGGCAAGGTGCTGCAAAGCCTGACCAAGGCGGGTACCCGCAACCCACTGTTCCT GCTGGATGAGATCGACAAGCTGGGCACCGACTTTCGGGGGGATCCGTCAAGCGCCTTGCTGGAAGTGCTCGATCCTGAAC AGAACCACACCTTCGGCGACCATTACGTGGAGGTCGATTTCGACCTGAGCGACGTGATGTTTGTGGCAACGTCAAACTCG ATGAATATTCCTCCGGCCTTGCTGGACCGCATGGAAGTGATCCGGCTTGCAGGCTACACGGAAGACGAGAAAACCAGCAT TGCGATGCGCTATCTGCTGCCCAAGCAGCTGAAGAACAATGGTGTCAAGGAGGGCGAGCTGGAAGTGACGGAGCAGGCCA TACGCGACATCGTGCGTTACTACACACGGGAGGCCGGTGTGCGTTCGCTGGAGCGGGATCTCTCCAAAATCTGCCGCAAG GTGGTCAAGGGCATTCAGCTCAAGAAAATGATGGCCAAGGTCGTGGTGGAGCCCGACAACCTGAACGACTTCCTGGGCGT GCGCAAATTCGACTACGGCCGTGCCGAACAGCAGAATCAGGTTGGCCAGGTGGTCGGCCTGGCCTGGACGGAAGTCGGTG GCGATTTGTTGACGATTGAGGCGGCCATCATGCCGGGCAAAGGCGTGATCACGCGTACTGGCTTGTTGGGCGACGTGATG AAGGAATCGGTGGAGGCCGCGCGTACGGTGGTTCGCAGCCGCTCCAGAATGCTGGGCATCAAGGATGAGATGTTCGAGAA GCGCGACATCCATATTCACGTGCCGGATGGTGCGACGCCCAAGGACGGGCCGAGCGCTGGCGCTGCCATGACCACGGCCT TTGTCTCGGCCCTCACCGGCATTCCGGTGCGCGGCGATGTTGCGATGACGGGTGAGATCACTTTGCGTGGTGAAGTGACC GCCATTGGTGGCTTGAAGGAAAAATTGCTGGCTGCTTTGCGCGGTGGCATCAAGACGGTATTGATCCCGGAAGAAAATGC CAAGGACCTGCAGGAAATTCCGGACAACGTGAAGAGCGGTCTGAACATCGTGCCGGTGAAGTGGATTGATCAGGTGCTGC AGGTCGCACTGGAGCGCAATCCTGTTCCGTTGAGTGATGAAGAAGTCGCTGTTGCCGCTGCGGCCGCTGTCGCTACACCT GTCGAAGTTGCAGGCACTGTGAAGCATTGA
Upstream 100 bases:
>100_bases GCGCAAGGCTTGAAAAGCAATTCTTGCGCCCCACTTCTGGGTTGACTACGCTACTCCTGGCCATGAAACTGGTCGCCACG GCTTACGTTTAAGGTTTTAT
Downstream 100 bases:
>100_bases AGCAAAACAGAAGCAAACTTTTTTTCGATTTGTTGAAAAGCCTGAAAAGTTACGCTATAATTTGAGGCTGTTATCGCGGG AGTAGCTCAGTTGGTAGAGC
Product: Lon-A peptidase
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 809; Mature: 808
Protein sequence:
>809_residues MSGQTSLPSTPIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALESAMEAERRIMLVAQKAAAKDEPSVEDMFEVGCVATI LQLLKLPDGTVKVLVEGQQRARVNKIEDGEQHFTANVTPVEPTVVVVGDKGSEIEALRRAVMQQFDHYVKLNKKIPPEIL TSISSIDDAGRLADTIAAHLPLKLDAKQIILDLDNVKLRLENLYEQLEREVDILNVDKKIRGRVKRQMEKNQRDFYLNEQ VKAIQKELGEGEEGADIEEIEKKIKSAKMPQDARKKAESELKKLKLMSPMSAEATVVRTYIDVLTGLPWSKKTKIKHDLV NAENVLNEDHYGLEKVKDRIVEYLAVQQRVDKLKAPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGH RRTYIGALPGKVLQSLTKAGTRNPLFLLDEIDKLGTDFRGDPSSALLEVLDPEQNHTFGDHYVEVDFDLSDVMFVATSNS MNIPPALLDRMEVIRLAGYTEDEKTSIAMRYLLPKQLKNNGVKEGELEVTEQAIRDIVRYYTREAGVRSLERDLSKICRK VVKGIQLKKMMAKVVVEPDNLNDFLGVRKFDYGRAEQQNQVGQVVGLAWTEVGGDLLTIEAAIMPGKGVITRTGLLGDVM KESVEAARTVVRSRSRMLGIKDEMFEKRDIHIHVPDGATPKDGPSAGAAMTTAFVSALTGIPVRGDVAMTGEITLRGEVT AIGGLKEKLLAALRGGIKTVLIPEENAKDLQEIPDNVKSGLNIVPVKWIDQVLQVALERNPVPLSDEEVAVAAAAAVATP VEVAGTVKH
Sequences:
>Translated_809_residues MSGQTSLPSTPIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALESAMEAERRIMLVAQKAAAKDEPSVEDMFEVGCVATI LQLLKLPDGTVKVLVEGQQRARVNKIEDGEQHFTANVTPVEPTVVVVGDKGSEIEALRRAVMQQFDHYVKLNKKIPPEIL TSISSIDDAGRLADTIAAHLPLKLDAKQIILDLDNVKLRLENLYEQLEREVDILNVDKKIRGRVKRQMEKNQRDFYLNEQ VKAIQKELGEGEEGADIEEIEKKIKSAKMPQDARKKAESELKKLKLMSPMSAEATVVRTYIDVLTGLPWSKKTKIKHDLV NAENVLNEDHYGLEKVKDRIVEYLAVQQRVDKLKAPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGH RRTYIGALPGKVLQSLTKAGTRNPLFLLDEIDKLGTDFRGDPSSALLEVLDPEQNHTFGDHYVEVDFDLSDVMFVATSNS MNIPPALLDRMEVIRLAGYTEDEKTSIAMRYLLPKQLKNNGVKEGELEVTEQAIRDIVRYYTREAGVRSLERDLSKICRK VVKGIQLKKMMAKVVVEPDNLNDFLGVRKFDYGRAEQQNQVGQVVGLAWTEVGGDLLTIEAAIMPGKGVITRTGLLGDVM KESVEAARTVVRSRSRMLGIKDEMFEKRDIHIHVPDGATPKDGPSAGAAMTTAFVSALTGIPVRGDVAMTGEITLRGEVT AIGGLKEKLLAALRGGIKTVLIPEENAKDLQEIPDNVKSGLNIVPVKWIDQVLQVALERNPVPLSDEEVAVAAAAAVATP VEVAGTVKH >Mature_808_residues SGQTSLPSTPIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALESAMEAERRIMLVAQKAAAKDEPSVEDMFEVGCVATIL QLLKLPDGTVKVLVEGQQRARVNKIEDGEQHFTANVTPVEPTVVVVGDKGSEIEALRRAVMQQFDHYVKLNKKIPPEILT SISSIDDAGRLADTIAAHLPLKLDAKQIILDLDNVKLRLENLYEQLEREVDILNVDKKIRGRVKRQMEKNQRDFYLNEQV KAIQKELGEGEEGADIEEIEKKIKSAKMPQDARKKAESELKKLKLMSPMSAEATVVRTYIDVLTGLPWSKKTKIKHDLVN AENVLNEDHYGLEKVKDRIVEYLAVQQRVDKLKAPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGHR RTYIGALPGKVLQSLTKAGTRNPLFLLDEIDKLGTDFRGDPSSALLEVLDPEQNHTFGDHYVEVDFDLSDVMFVATSNSM NIPPALLDRMEVIRLAGYTEDEKTSIAMRYLLPKQLKNNGVKEGELEVTEQAIRDIVRYYTREAGVRSLERDLSKICRKV VKGIQLKKMMAKVVVEPDNLNDFLGVRKFDYGRAEQQNQVGQVVGLAWTEVGGDLLTIEAAIMPGKGVITRTGLLGDVMK ESVEAARTVVRSRSRMLGIKDEMFEKRDIHIHVPDGATPKDGPSAGAAMTTAFVSALTGIPVRGDVAMTGEITLRGEVTA IGGLKEKLLAALRGGIKTVLIPEENAKDLQEIPDNVKSGLNIVPVKWIDQVLQVALERNPVPLSDEEVAVAAAAAVATPV EVAGTVKH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=564, Percent_Identity=45.2127659574468, Blast_Score=505, Evalue=1e-143, Organism=Homo sapiens, GI21396489, Length=661, Percent_Identity=39.0317700453858, Blast_Score=474, Evalue=1e-133, Organism=Escherichia coli, GI1786643, Length=775, Percent_Identity=66.9677419354839, Blast_Score=1053, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=696, Percent_Identity=38.3620689655172, Blast_Score=456, Evalue=1e-128, Organism=Caenorhabditis elegans, GI17556486, Length=541, Percent_Identity=38.8170055452865, Blast_Score=421, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6319449, Length=711, Percent_Identity=40.9282700421941, Blast_Score=504, Evalue=1e-143, Organism=Drosophila melanogaster, GI221513036, Length=576, Percent_Identity=43.9236111111111, Blast_Score=484, Evalue=1e-137, Organism=Drosophila melanogaster, GI24666867, Length=620, Percent_Identity=42.5806451612903, Blast_Score=484, Evalue=1e-136,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 89175; Mature: 89043
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQTSLPSTPIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALESAMEAERRIMLVAQKA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEHHH AAKDEPSVEDMFEVGCVATILQLLKLPDGTVKVLVEGQQRARVNKIEDGEQHFTANVTPV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCHHEEECCCCC EPTVVVVGDKGSEIEALRRAVMQQFDHYVKLNKKIPPEILTSISSIDDAGRLADTIAAHL CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHC PLKLDAKQIILDLDNVKLRLENLYEQLEREVDILNVDKKIRGRVKRQMEKNQRDFYLNEQ CCEECHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH VKAIQKELGEGEEGADIEEIEKKIKSAKMPQDARKKAESELKKLKLMSPMSAEATVVRTY HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IDVLTGLPWSKKTKIKHDLVNAENVLNEDHYGLEKVKDRIVEYLAVQQRVDKLKAPILCL HHHHHCCCCCCCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE VGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGHRRTYIGALPGKVLQSLTKAG ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHEECCCCHHHHHHHHHCC TRNPLFLLDEIDKLGTDFRGDPSSALLEVLDPEQNHTFGDHYVEVDFDLSDVMFVATSNS CCCCEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCC MNIPPALLDRMEVIRLAGYTEDEKTSIAMRYLLPKQLKNNGVKEGELEVTEQAIRDIVRY CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH YTREAGVRSLERDLSKICRKVVKGIQLKKMMAKVVVEPDNLNDFLGVRKFDYGRAEQQNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHH VGQVVGLAWTEVGGDLLTIEAAIMPGKGVITRTGLLGDVMKESVEAARTVVRSRSRMLGI HHHHHHHHHHHCCCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC KDEMFEKRDIHIHVPDGATPKDGPSAGAAMTTAFVSALTGIPVRGDVAMTGEITLRGEVT HHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEE AIGGLKEKLLAALRGGIKTVLIPEENAKDLQEIPDNVKSGLNIVPVKWIDQVLQVALERN ECCHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHCC PVPLSDEEVAVAAAAAVATPVEVAGTVKH CCCCCCCHHHHHHHHHHHCCHHHCCCCCC >Mature Secondary Structure SGQTSLPSTPIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALESAMEAERRIMLVAQKA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEHHH AAKDEPSVEDMFEVGCVATILQLLKLPDGTVKVLVEGQQRARVNKIEDGEQHFTANVTPV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCHHEEECCCCC EPTVVVVGDKGSEIEALRRAVMQQFDHYVKLNKKIPPEILTSISSIDDAGRLADTIAAHL CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHC PLKLDAKQIILDLDNVKLRLENLYEQLEREVDILNVDKKIRGRVKRQMEKNQRDFYLNEQ CCEECHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH VKAIQKELGEGEEGADIEEIEKKIKSAKMPQDARKKAESELKKLKLMSPMSAEATVVRTY HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IDVLTGLPWSKKTKIKHDLVNAENVLNEDHYGLEKVKDRIVEYLAVQQRVDKLKAPILCL HHHHHCCCCCCCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE VGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGHRRTYIGALPGKVLQSLTKAG ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHEECCCCHHHHHHHHHCC TRNPLFLLDEIDKLGTDFRGDPSSALLEVLDPEQNHTFGDHYVEVDFDLSDVMFVATSNS CCCCEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCC MNIPPALLDRMEVIRLAGYTEDEKTSIAMRYLLPKQLKNNGVKEGELEVTEQAIRDIVRY CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH YTREAGVRSLERDLSKICRKVVKGIQLKKMMAKVVVEPDNLNDFLGVRKFDYGRAEQQNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHH VGQVVGLAWTEVGGDLLTIEAAIMPGKGVITRTGLLGDVMKESVEAARTVVRSRSRMLGI HHHHHHHHHHHCCCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC KDEMFEKRDIHIHVPDGATPKDGPSAGAAMTTAFVSALTGIPVRGDVAMTGEITLRGEVT HHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEE AIGGLKEKLLAALRGGIKTVLIPEENAKDLQEIPDNVKSGLNIVPVKWIDQVLQVALERN ECCHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHCC PVPLSDEEVAVAAAAAVATPVEVAGTVKH CCCCCCCHHHHHHHHHHHCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]