| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91787825
Identifier: 91787825
GI number: 91787825
Start: 2009573
End: 2010733
Strand: Direct
Name: 91787825
Synonym: Bpro_1948
Alternate gene names: NA
Gene position: 2009573-2010733 (Clockwise)
Preceding gene: 91787823
Following gene: 91787826
Centisome position: 38.64
GC content: 52.97
Gene sequence:
>1161_bases ATGTCTCCCAATGTGGAGCTAACCATGCGTCGGCTACAGCCAGCATCGACGACGCGACAGGAAAGAGGCCACAAGGCGAC TATTGGCAATTGTCGGAGCCTAACAACCGGTTCAGCGGACGGCGTTCCGCCGCCGCTGAACCGGGGCGTTGAGGCTGTAT TTTTAGTCCAAAAACTTGAAATGAATTCTTCAACGAGAATACTGACCTCTCAGAATCGCGCATACGGCGCGATCGGAACC TGGGGAATGGTAAAAGTACTCTCGATTTGCCCTTGTCAGAGTGAATGCGGACTAACAATACGGCCTCGTTGGGCCTCGCA AGTACACGCCTGCAGACCGTCCGAACAGTCGTGCAGAACCCGAGAAAGGAGGAGGTCTGGTTCGGCACCGTTTTTGGTTT CCATTCAAACTTTCTTGGAGCGACAAATGCAGACTTCCTTTGAACATAATCGTTCGTACAACAAACTCCCGACAGTGTTT GATGCAGACTTGGCACTTCGGCAGAGAGACCGCGACTCAGTCATCGAGGAACTTCTAATCGTAATTGAGGACCATGGCCT TCAGAACTCGGTTGGCCTACGCCTCCTACATCGGCACAACGAAATCGCCGAAAGCGAAGTAATGCTGGAGGAAGCTCGCT TCGACGAACATGGTCTTGCGTTGGTCACACTGGCAAGCCCAGTGGCGGCTGTCGATTCAACAGTTGCAGCCAACAGCTGG ATGCTCGACGGAGACGAGTTCATTGCCGTCGAGTACTCACGCGCATCCCTGTTGCAGTCCCCTGGAGTTAGCCCGAAGAC TCAACCACTATTCTTCAGCGCACTTCAGCGAAAGCTGCGTGAGTTCGATGTTGAAACGTGGGTTGGTCCTGCGCTGATTG AAAGCGACTTCGTATCCTCGCACTCACAAGGCCGTGAGCTACTTCTTGAACAAAGTGCGTTCGATGATCGTGCAAACGTC CTGCGATATGTATCGATCGACGAAATCGCTCCAAGTGGCGTCGTAGAAACTTTTTGGGTAGCCTCCGTAGAGGCCGCAAC AAGGAAGTCACCTGCCACCAAAGCCCCAGGCGGGACAAAGACGATAAAAAAGGTCTGCAAACGAATCTGCCCGTCAGTAC AGAATCCGCCTGTGCATCAAGGCACATTCATCCACACGTGA
Upstream 100 bases:
>100_bases CAATATGTGCTCAACCCAGGATGTCGATCGGACGCAATGCAGCTACTTTCGGCACCCTCCTTCAAATGGAGGATGTCCCA ACCGTTGAGTTGGGGCGAGA
Downstream 100 bases:
>100_bases GCGAGGCCTAACCCAGCATTCCAGCGGACCGCCTTCGGCGGCCGCTGAATTCAACCGTTGAGGGTGTACTTTTAGTCCCG CCAGGGCGTTGATCTGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSPNVELTMRRLQPASTTRQERGHKATIGNCRSLTTGSADGVPPPLNRGVEAVFLVQKLEMNSSTRILTSQNRAYGAIGT WGMVKVLSICPCQSECGLTIRPRWASQVHACRPSEQSCRTRERRRSGSAPFLVSIQTFLERQMQTSFEHNRSYNKLPTVF DADLALRQRDRDSVIEELLIVIEDHGLQNSVGLRLLHRHNEIAESEVMLEEARFDEHGLALVTLASPVAAVDSTVAANSW MLDGDEFIAVEYSRASLLQSPGVSPKTQPLFFSALQRKLREFDVETWVGPALIESDFVSSHSQGRELLLEQSAFDDRANV LRYVSIDEIAPSGVVETFWVASVEAATRKSPATKAPGGTKTIKKVCKRICPSVQNPPVHQGTFIHT
Sequences:
>Translated_386_residues MSPNVELTMRRLQPASTTRQERGHKATIGNCRSLTTGSADGVPPPLNRGVEAVFLVQKLEMNSSTRILTSQNRAYGAIGT WGMVKVLSICPCQSECGLTIRPRWASQVHACRPSEQSCRTRERRRSGSAPFLVSIQTFLERQMQTSFEHNRSYNKLPTVF DADLALRQRDRDSVIEELLIVIEDHGLQNSVGLRLLHRHNEIAESEVMLEEARFDEHGLALVTLASPVAAVDSTVAANSW MLDGDEFIAVEYSRASLLQSPGVSPKTQPLFFSALQRKLREFDVETWVGPALIESDFVSSHSQGRELLLEQSAFDDRANV LRYVSIDEIAPSGVVETFWVASVEAATRKSPATKAPGGTKTIKKVCKRICPSVQNPPVHQGTFIHT >Mature_385_residues SPNVELTMRRLQPASTTRQERGHKATIGNCRSLTTGSADGVPPPLNRGVEAVFLVQKLEMNSSTRILTSQNRAYGAIGTW GMVKVLSICPCQSECGLTIRPRWASQVHACRPSEQSCRTRERRRSGSAPFLVSIQTFLERQMQTSFEHNRSYNKLPTVFD ADLALRQRDRDSVIEELLIVIEDHGLQNSVGLRLLHRHNEIAESEVMLEEARFDEHGLALVTLASPVAAVDSTVAANSWM LDGDEFIAVEYSRASLLQSPGVSPKTQPLFFSALQRKLREFDVETWVGPALIESDFVSSHSQGRELLLEQSAFDDRANVL RYVSIDEIAPSGVVETFWVASVEAATRKSPATKAPGGTKTIKKVCKRICPSVQNPPVHQGTFIHT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42793; Mature: 42662
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPNVELTMRRLQPASTTRQERGHKATIGNCRSLTTGSADGVPPPLNRGVEAVFLVQKLE CCCCCEEHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHC MNSSTRILTSQNRAYGAIGTWGMVKVLSICPCQSECGLTIRPRWASQVHACRPSEQSCRT CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCHHHHHH RERRRSGSAPFLVSIQTFLERQMQTSFEHNRSYNKLPTVFDADLALRQRDRDSVIEELLI HHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHCCHHHHHHHHHH VIEDHGLQNSVGLRLLHRHNEIAESEVMLEEARFDEHGLALVTLASPVAAVDSTVAANSW HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCE MLDGDEFIAVEYSRASLLQSPGVSPKTQPLFFSALQRKLREFDVETWVGPALIESDFVSS EECCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHC HSQGRELLLEQSAFDDRANVLRYVSIDEIAPSGVVETFWVASVEAATRKSPATKAPGGTK HHHHHHHHHHHHCCCCHHHEEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH TIKKVCKRICPSVQNPPVHQGTFIHT HHHHHHHHHCCCCCCCCCCCCCEECC >Mature Secondary Structure SPNVELTMRRLQPASTTRQERGHKATIGNCRSLTTGSADGVPPPLNRGVEAVFLVQKLE CCCCEEHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHC MNSSTRILTSQNRAYGAIGTWGMVKVLSICPCQSECGLTIRPRWASQVHACRPSEQSCRT CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCHHHHHH RERRRSGSAPFLVSIQTFLERQMQTSFEHNRSYNKLPTVFDADLALRQRDRDSVIEELLI HHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHCCHHHHHHHHHH VIEDHGLQNSVGLRLLHRHNEIAESEVMLEEARFDEHGLALVTLASPVAAVDSTVAANSW HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCE MLDGDEFIAVEYSRASLLQSPGVSPKTQPLFFSALQRKLREFDVETWVGPALIESDFVSS EECCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHC HSQGRELLLEQSAFDDRANVLRYVSIDEIAPSGVVETFWVASVEAATRKSPATKAPGGTK HHHHHHHHHHHHCCCCHHHEEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH TIKKVCKRICPSVQNPPVHQGTFIHT HHHHHHHHHCCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA