The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91787763

Identifier: 91787763

GI number: 91787763

Start: 1946241

End: 1947929

Strand: Reverse

Name: 91787763

Synonym: Bpro_1884

Alternate gene names: NA

Gene position: 1947929-1946241 (Counterclockwise)

Preceding gene: 91787764

Following gene: 91787762

Centisome position: 37.46

GC content: 67.79

Gene sequence:

>1689_bases
ATGATTCTTGATGCCAACAGCATCCAGAACGGCGCCGAGCTGCAGGCCGATGTCTGCGTGGTGGGCGGAGGCCCGGCGGG
CATTGCGCTCACGCTGTCCCTGTCGGAGCGCGGCCTCTCGGTGCTGATGCTGGAGTCCGGGCAACTGCAGGAAGACGCCA
AAACCCAGTCGCTCTATGAGGGCGAGGTCGCCGATGAGCGATTGCACAGCCCGCCCGACAAGTACCGGCAGCGGCGCCTG
GGCGGGTCGTCGGCGATCTGGGGTGGCCGTTGCATGCCGTTTGATCCCATCGACTTTGAAACCCGCAACCATGTGCCGAA
CAGCGGATGGCCGCTGTCGTATGACGACCTGCTGCCCTATTACCCGCAGGCCAACGCGCTGGCAGAAGCCGGGCGTTTCA
GCTATGACGCCGGCGAAGCCTTCGGCCCGCAGCTGGAGCCGCTGATCCGCGGCTTCGACAGCCCGCGCGTGCGCACCTGC
GGGCTCGAGCGGTTTTCCTGCCCGACCCACTTCGGCACCCGTTACGCCAAGCGGCTGCAACTGGCGCCTGGCGTGCAGGT
CCTGCTCGGTGCCAATTGCACCGCCGTCCGGCTGCAGGCCGACGGGCAGGCGGTGCGCACGCTGGAAGTTGCCACCCTGG
CCGGCAAGCGCTTTACCGTCACGCCGCGCGCGGCGGTGCTGGCCGCCGGCGGCCTTGAAACCGCGCGCCTGCTGCTGGCC
TCGCGTGACGTCACACCGGCAGGCGTGGGCAACTTCCACGACGTGGTCGGCCGCTATTACATGTGCCACATCGCGGGCAA
CGTCGGCACCCTGACCGTCCAGGGCCCGACCCGCAACGTGCGGCACGGCTACGAGGTGGCGCCGGAGGGTATTTACTGCC
GCCGGCGGCTGTCGGTGACAGCGGCCGAGCAGCGGCGGCTGGGGCTGGCGAACGCGGTCGCGCGCCTGCACTTTCCGCGC
ATCACCGACCCGGCACACCGCAACGGCGTGCTGTCCGGCTTGTTTCTGGCACGCCGGCTGATCAGCTATGAATACGGCAA
ACGGCTGAACGACGGCAACGCCACCTCGCCGGGGCACTATGCCCGCCATCTCTTCAATGTGGTGGCCGACCCGATGGACA
CCACGGCATTCCTGGGTCACTGGCTGCTGCGACGCTCGCTCGCCGAGCGCAAATTCCCGTCGGTGATCCTGCGCAACCGC
ACCAACCGCTTCAGCCTGGAGGTGCACGGCGAGCAGATGCCGCAAGCCGGCAGCCGCGTGACGCTGACCGACAAGCTCGA
TGCCCTCGGCATGCCGCAGCTGCGCGTGGACTGGCGCTACAGCCAGGCGGACATTGATTCGGTCCGCGGCACACTGGACG
TGCTGGTGCAGGAGTTTGCGCAAAGCGGAGTTGCCAGCTTTGACTACAACCGCGACACACTGGAGGAAGACATCATGCGC
TTCGGCGCCTATGGCGGTCACCACATCGGTACGGCACGCATGGGCCTCGATCCACGCACCAGCGTGGTCGACGCCGATTG
CCGGGTGCATTCGGTACGCAACCTGTTCGTGGCGGGCAGCGCCGTGTTCCCCACCTCCAGCCAGGCCAACCCCACGCTCA
CCCTGATTGCGATGTCGCTCAGGCTGGGCGAGCACCTGGCGCGGCGCCTGCACACAGAGCATGCCGCGCCCGTGGGAGCG
TGCGCATGA

Upstream 100 bases:

>100_bases
TTTTTGCCAGCGTGGCACGGGTTCACCAGCGCCACTTCGGCATTGCCGGCCAGCCTCGGAACACCCACATCAGCAGCGCC
TCTGCGCAGGAACGGTCGCC

Downstream 100 bases:

>100_bases
AAATACTGAGAGTCCTGGTGTTGGGCGGGTCCGGCCACATCGGAACGCAGCTCGTTGAGGCGCTGAAAAGCACCCCGTGG
GCGGTACCGGTCAGCGCCTC

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: GMC Oxidoreductase; FAD Dependent Oxidoreductase; Oxidoreductase; GMC Family Oxidoreductase; Choline Dehydrogenase; GMC Oxidoreductase Family; Flavoprotein Related Choline Dehydrogenase; Choline Dehydrogenase-Like Flavoprotein; Glucose Dehydrogenase; Glucose-Methanol-Choline Family Oxidoreductase; Dehydrogenase Protein; NAD-Dependent Epimerase/Dehydratase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Dehydrogenase; Oxidoreductase-Like Protein; Dehydrogenase Subunit-Like Protein; 2-Keto-Gluconate Dehydrogenase; Oxidoreductase GMC Family; Gluconate Dehydrogenase; FAD-Dependent Oxidoreductase; Glucoside 3-Dehydrogenase; Glucose Dehydrogenase Subunit Alpha; Capsular Polysaccharide Biosynthesis Oxidoreductase; Dehydrogenase Subunit I; Solbitol Dehydrogenase Large Subunit

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL
GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC
GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA
SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR
ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR
TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR
FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA
CA

Sequences:

>Translated_562_residues
MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL
GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC
GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA
SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR
ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR
TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR
FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA
CA
>Mature_562_residues
MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL
GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC
GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA
SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR
ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR
TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR
FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA
CA

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61393; Mature: 61393

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYE
CEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC
GEVADERLHSPPDKYRQRRLGGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPY
CCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
YPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTCGLERFSCPTHFGTRYAKRLQ
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHC
LAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA
CCCCCEEEECCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCHHEEECCCHHHHHHHHH
SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVT
CCCCCCCCCCCHHHHHHCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEHCCCEE
AAEQRRLGLANAVARLHFPRITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHY
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
ARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNRTNRFSLEVHGEQMPQAGSRV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCEE
TLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR
EEECCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSL
HCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHEEEECCEECCCCCCCCCEEEEHHHHH
RLGEHLARRLHTEHAAPVGACA
HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYE
CEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC
GEVADERLHSPPDKYRQRRLGGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPY
CCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
YPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTCGLERFSCPTHFGTRYAKRLQ
CCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHC
LAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA
CCCCCEEEECCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCHHEEECCCHHHHHHHHH
SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVT
CCCCCCCCCCCHHHHHHCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEHCCCEE
AAEQRRLGLANAVARLHFPRITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHY
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
ARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNRTNRFSLEVHGEQMPQAGSRV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCEE
TLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR
EEECCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSL
HCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHEEEECCEECCCCCCCCCEEEEHHHHH
RLGEHLARRLHTEHAAPVGACA
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA