| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is glnG [H]
Identifier: 91787691
GI number: 91787691
Start: 1873612
End: 1875096
Strand: Direct
Name: glnG [H]
Synonym: Bpro_1810
Alternate gene names: 91787691
Gene position: 1873612-1875096 (Clockwise)
Preceding gene: 91787690
Following gene: 91787695
Centisome position: 36.03
GC content: 63.37
Gene sequence:
>1485_bases ATGAAACCGATTTGGATCGTTGACGATGACCAGTCCATCCGGTTTGTTCTGGAGAAGGCCCTGCTTCGTGAGGATCTTCC TACGCGCAGTTTCACCAACCCCCGTGAGGTCCTCCTGGCGCTGGAAAACGCGACAGAGGAAGAGGGCCCGCAAGTCCTGG TGAGCGACATTCGCATGCCCGGCGGGTCGGGGCTGGATCTGCTGGAGAAGGTCAAGCAAAAGCTTCCCGGCCTGCCGGTC ATCATCATGACGGCGTTCTCCGACCTTGACAGCGCTGTTTCTGCTTTTCAGGGCGGCGCTTTCGAATACCTGCCCAAGCC CTTCGACCTCCCAAAAGCGGTGGAACTCATACGCCGTGCGGTGGAAGAAAGCCAGCGCGAGGAGGTGGCCGAGGAGCGCA TGGCGGCCGCGCCGGAAATGCTCGGCCAGGCGCCGGCGATGCAGGATGTGTTCCGTGCCATTGGCCGCTTGAGCCAGAGC ATGGTGACGGTGATGATCACCGGCGAATCGGGGTCGGGCAAGGAACTGGTGGCGCGCGCGCTGCACAAGCACTCACCGCG CGCCAACGGGCCTTTTGTGGCCATCAATACCGCGGCCATTCCCAAAGACCTGCTCGAGAGCGAACTCTTCGGTCATGAGC GCGGCGCCTTCACCGGCGCGCAGACCATGCGGCGTGGCCGCTTTGAGCAGGCAGAGGGCGGAACGCTGTTCCTCGATGAA ATCGGTGACATGCCCTTTGACCTGCAAACCCGCCTGCTCCGGGTGCTGAGCGATGGTCACTTTTACCGCGTGGGCGGCCA CAACGCCGTCAAGGCCAATGTGCGCGTGATTGCCGCCACGCACCAGGACCTGGAGCAGCGCGTCAAGGAGGGTGGTTTTC GCGAAGACCTCTTCCACCGGCTCAACGTGATTCGGCTGCGCCTGCCCGCGCTGCGCGAACGGCGCGAGGATGTGTTCATG CTGACCCGCCATTTCCTGCAGCAAAGCGCCAAGCAGCTGGGTGTGGAGCCCAAGCGCATTTCCGATGCGGCGCTGCAGCA ATTGAGCAACTTCAGTTTTCCCGGCAATGTGCGCCAGCTGGAAAACATCTGTCACTGGCTCACCGTGATGGCGCCCGCGC AGGTGATTGAAGCCAAGGACCTGCCACCTGAAGTGCTGGGCGTGCCGCATGAACCGGCGCCGGGGGCTTCCGACAAAGCG CCTCTGGCGCCCGTCACGCCGACGATGCATATGCCCGAGCCTGCCGTCTTGGCGGGGCCGGCGGCTGGCGAGCAGAATTG GGAAGCCGGCCTTGAGGCGGAAGCCCTCGCTTTGCTGGCGGCCGGTCGCAGCGATGTGTGGGATGTGCTGACGCGCCGTT TTGAGTCCCGGCTGATCCAGACGGCGCTGCTCAATACCCGCGGGCGTCGCATCGAGGCCGCCCAGAAGTTGGGTATTGGC CGCAATACCATCACGCGCAAGATCCAGGAGCTGAATCTGGAGTAA
Upstream 100 bases:
>100_bases TGCTGATACCGTTGCCTTGAGGTGTGTCCTTCCTACATGGCTTGACAAATAAAGCGCGATGACGCGAATGGCACCGAATG TACAACAAGGACTGCACAAC
Downstream 100 bases:
>100_bases AACCGGCTGCAATCCCTGAGGTTCCCCGGGGTGCAGTTCTATTTGCTATGGCAATCAGGGATGCGGAGCACACCCGATGG TCCAGCCGTGCTGCACGGAC
Product: nitrogen metabolism transcriptional regulator NtrC
Products: NADP; 2 glutathione [C]
Alternate protein names: NA
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MKPIWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMPGGSGLDLLEKVKQKLPGLPV IIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRAVEESQREEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQS MVTVMITGESGSGKELVARALHKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDE IGDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHRLNVIRLRLPALRERREDVFM LTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQLENICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKA PLAPVTPTMHMPEPAVLAGPAAGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIG RNTITRKIQELNLE
Sequences:
>Translated_494_residues MKPIWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMPGGSGLDLLEKVKQKLPGLPV IIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRAVEESQREEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQS MVTVMITGESGSGKELVARALHKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDE IGDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHRLNVIRLRLPALRERREDVFM LTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQLENICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKA PLAPVTPTMHMPEPAVLAGPAAGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIG RNTITRKIQELNLE >Mature_494_residues MKPIWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMPGGSGLDLLEKVKQKLPGLPV IIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRAVEESQREEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQS MVTVMITGESGSGKELVARALHKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDE IGDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHRLNVIRLRLPALRERREDVFM LTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQLENICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKA PLAPVTPTMHMPEPAVLAGPAAGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIG RNTITRKIQELNLE
Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]
COG id: COG2204
COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
Organism=Escherichia coli, GI1790299, Length=493, Percent_Identity=55.9837728194726, Blast_Score=524, Evalue=1e-150, Organism=Escherichia coli, GI1788550, Length=497, Percent_Identity=39.2354124748491, Blast_Score=349, Evalue=2e-97, Organism=Escherichia coli, GI1790437, Length=488, Percent_Identity=37.7049180327869, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI1788905, Length=329, Percent_Identity=44.3768996960486, Blast_Score=275, Evalue=6e-75, Organism=Escherichia coli, GI87082117, Length=225, Percent_Identity=52.8888888888889, Blast_Score=243, Evalue=2e-65, Organism=Escherichia coli, GI1789087, Length=259, Percent_Identity=47.1042471042471, Blast_Score=232, Evalue=5e-62, Organism=Escherichia coli, GI1789233, Length=357, Percent_Identity=38.0952380952381, Blast_Score=228, Evalue=6e-61, Organism=Escherichia coli, GI87082152, Length=265, Percent_Identity=46.4150943396226, Blast_Score=225, Evalue=4e-60, Organism=Escherichia coli, GI1786524, Length=265, Percent_Identity=45.6603773584906, Blast_Score=208, Evalue=8e-55, Organism=Escherichia coli, GI1787583, Length=385, Percent_Identity=33.7662337662338, Blast_Score=197, Evalue=2e-51, Organism=Escherichia coli, GI87081872, Length=225, Percent_Identity=44, Blast_Score=193, Evalue=2e-50, Organism=Escherichia coli, GI1789828, Length=211, Percent_Identity=36.9668246445498, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI87081858, Length=290, Percent_Identity=30.3448275862069, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011006 - InterPro: IPR020441 - InterPro: IPR009057 - InterPro: IPR002197 - InterPro: IPR002078 - InterPro: IPR010114 - InterPro: IPR001789 [H]
Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 54634; Mature: 54634
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPIWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMP CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCC GGSGLDLLEKVKQKLPGLPVIIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRA CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHH VEESQREEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQSMVTVMITGESGSGKELVARA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH LHKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDE HHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEHHH IGDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHR HCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECEEEEEECHHHHHHHHHHCCCHHHHHHH LNVIRLRLPALRERREDVFMLTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH ENICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKAPLAPVTPTMHMPEPAVLAGP HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC AAGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIG CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC RNTITRKIQELNLE HHHHHHHHHHHCCC >Mature Secondary Structure MKPIWIVDDDQSIRFVLEKALLREDLPTRSFTNPREVLLALENATEEEGPQVLVSDIRMP CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCC GGSGLDLLEKVKQKLPGLPVIIMTAFSDLDSAVSAFQGGAFEYLPKPFDLPKAVELIRRA CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHH VEESQREEVAEERMAAAPEMLGQAPAMQDVFRAIGRLSQSMVTVMITGESGSGKELVARA HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH LHKHSPRANGPFVAINTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDE HHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEHHH IGDMPFDLQTRLLRVLSDGHFYRVGGHNAVKANVRVIAATHQDLEQRVKEGGFREDLFHR HCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECEEEEEECHHHHHHHHHHCCCHHHHHHH LNVIRLRLPALRERREDVFMLTRHFLQQSAKQLGVEPKRISDAALQQLSNFSFPGNVRQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH ENICHWLTVMAPAQVIEAKDLPPEVLGVPHEPAPGASDKAPLAPVTPTMHMPEPAVLAGP HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC AAGEQNWEAGLEAEALALLAAGRSDVWDVLTRRFESRLIQTALLNTRGRRIEAAQKLGIG CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC RNTITRKIQELNLE HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADPH2; oxidized glutathione [C]
Specific reaction: NADPH2 + oxidized glutathione = NADP + 2 glutathione [C]
General reaction: Oxidoreductases; Acting on NADH or NADPH; With a disulfide as acceptor [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]