| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yncE [C]
Identifier: 91787683
GI number: 91787683
Start: 1865031
End: 1866050
Strand: Direct
Name: yncE [C]
Synonym: Bpro_1802
Alternate gene names: 91787683
Gene position: 1865031-1866050 (Clockwise)
Preceding gene: 91787681
Following gene: 91787684
Centisome position: 35.86
GC content: 61.27
Gene sequence:
>1020_bases GTGAACGTTCCCGTCCGTAATCTGGCCGCCTGGTTGTGTGCAGTTGCTGGCTTGCTGCCTGCGGTTTGCCCGTCGGCGCT GGCCCAAACCGCCCCGCTTGCTTCGTTTTCCGCAGCGTCGCCCGTGTTTGTCCTCAATTCGCTCGATGACACGGTAAGTA TTGTCAACCCCGCGACCTGGACCGAGACCCGGCGCATTGCCACGGGCAAGCAGCCGCATCACCTGTACCTCACGCCTGAT GAAAAATCGGTGATTGTGGCCAATGCCTTGTCCGACACGCTGACCTTTATCGACCCGAAAACCGCCGAGGTGCAGCGCAC CGTGCGCGGCATTCTGGACCCGTACCAGTTGCGCTTTTCACCTGACATGAAGTGGTTTGTGACCGCCGCCAACCGCCTGA ACCATATCGACATTTACCGCTGGGACGGCAAGGACATCGTTCTGGCCAAGCGTGTGGCCACTGGCAAGACGCCCAGCCAT TTGTGGATAGACAGCAAAAGCAGCACGATTTATTCCACCATGCAGGACAGCGATGAGCTGATTGCGGTGGACCTGGCAAG CCAGGCCATCAAGTGGCGCACCAAAACCGGCTCCATCCCGGCCGACGTGTACGGAACGGCCGACGACAAATTCATGCTGG TCGGTCTCACAGGCAGCGACGCGGTCGAGGTGTATGACGTGAGTGGCAAGGAGCCCAAGCGCAGCAAGGTCATCAAGACC GGTGCCGGTGCCCACGCCTTCCGCGCCCTGGGCGACCGGCGGCATGTGCTGGTCAGCAACCGCGTGGCCAACAGCATCAG CAAAATCGATTTGCAGACTCTGGAGGTGGTGGACAGTTACCCCGCGCCGGGCGGGCCGGACTGCATCGACGTGAGCCGCG ACGGCAAGCAGATCCTGGTGACTTCGCGCTGGGCCCGCAAGCTCACCGTCATTGACATCGCCAGCCACAAGGTGGTACGC CAGATCAATGTTGGAAAGAGTCCCCACGGTGTCTGGACCCTTGATCACGCGCCGCGGTAG
Upstream 100 bases:
>100_bases CTGCGGGCTGCAATGGATTCCGGTCCTGAGGCACCGGCTACCGGCAGTCCGGGCATGCCCGCCCGGTACACTAGACGGTT GACCCTGGAAAGATATCTCT
Downstream 100 bases:
>100_bases TGGGCCCCCACGGTCGCTCACTGCGTGTAGCTCCCGAGGCCTTGCAGGCCGCGGCTCGCGAGACGCTTCGCCTCTGTCGC CGGTCCAAAGCTGCTCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Beta-Propeller Fold Protein; Signal Peptide; Cytochrome D1 Heme Region; Signal Peptide Protein; Outer Membrane Protein; PGRS-Subfamily Gly-Rich Protein; IPT/TIG Domain Protein; Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Surface Antigen-Like Protein; Cytochrome D1 Heme Subunit; Cell Surface Protein; Triple Helix Repeat-Containing Collagen; Yvtn Beta-Propeller Repeat Family Protein; Surface Layer Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Exported Protein
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MNVPVRNLAAWLCAVAGLLPAVCPSALAQTAPLASFSAASPVFVLNSLDDTVSIVNPATWTETRRIATGKQPHHLYLTPD EKSVIVANALSDTLTFIDPKTAEVQRTVRGILDPYQLRFSPDMKWFVTAANRLNHIDIYRWDGKDIVLAKRVATGKTPSH LWIDSKSSTIYSTMQDSDELIAVDLASQAIKWRTKTGSIPADVYGTADDKFMLVGLTGSDAVEVYDVSGKEPKRSKVIKT GAGAHAFRALGDRRHVLVSNRVANSISKIDLQTLEVVDSYPAPGGPDCIDVSRDGKQILVTSRWARKLTVIDIASHKVVR QINVGKSPHGVWTLDHAPR
Sequences:
>Translated_339_residues MNVPVRNLAAWLCAVAGLLPAVCPSALAQTAPLASFSAASPVFVLNSLDDTVSIVNPATWTETRRIATGKQPHHLYLTPD EKSVIVANALSDTLTFIDPKTAEVQRTVRGILDPYQLRFSPDMKWFVTAANRLNHIDIYRWDGKDIVLAKRVATGKTPSH LWIDSKSSTIYSTMQDSDELIAVDLASQAIKWRTKTGSIPADVYGTADDKFMLVGLTGSDAVEVYDVSGKEPKRSKVIKT GAGAHAFRALGDRRHVLVSNRVANSISKIDLQTLEVVDSYPAPGGPDCIDVSRDGKQILVTSRWARKLTVIDIASHKVVR QINVGKSPHGVWTLDHAPR >Mature_339_residues MNVPVRNLAAWLCAVAGLLPAVCPSALAQTAPLASFSAASPVFVLNSLDDTVSIVNPATWTETRRIATGKQPHHLYLTPD EKSVIVANALSDTLTFIDPKTAEVQRTVRGILDPYQLRFSPDMKWFVTAANRLNHIDIYRWDGKDIVLAKRVATGKTPSH LWIDSKSSTIYSTMQDSDELIAVDLASQAIKWRTKTGSIPADVYGTADDKFMLVGLTGSDAVEVYDVSGKEPKRSKVIKT GAGAHAFRALGDRRHVLVSNRVANSISKIDLQTLEVVDSYPAPGGPDCIDVSRDGKQILVTSRWARKLTVIDIASHKVVR QINVGKSPHGVWTLDHAPR
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36983; Mature: 36983
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVPVRNLAAWLCAVAGLLPAVCPSALAQTAPLASFSAASPVFVLNSLDDTVSIVNPATW CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCC TETRRIATGKQPHHLYLTPDEKSVIVANALSDTLTFIDPKTAEVQRTVRGILDPYQLRFS CHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHCCCCEEEEEC PDMKWFVTAANRLNHIDIYRWDGKDIVLAKRVATGKTPSHLWIDSKSSTIYSTMQDSDEL CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCE IAVDLASQAIKWRTKTGSIPADVYGTADDKFMLVGLTGSDAVEVYDVSGKEPKRSKVIKT EEEEEHHHHHEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEECCCCCCCHHHEEEC GAGAHAFRALGDRRHVLVSNRVANSISKIDLQTLEVVDSYPAPGGPDCIDVSRDGKQILV CCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE TSRWARKLTVIDIASHKVVRQINVGKSPHGVWTLDHAPR EECCCCEEEEEEECCCCEEHEECCCCCCCCEEEECCCCC >Mature Secondary Structure MNVPVRNLAAWLCAVAGLLPAVCPSALAQTAPLASFSAASPVFVLNSLDDTVSIVNPATW CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCC TETRRIATGKQPHHLYLTPDEKSVIVANALSDTLTFIDPKTAEVQRTVRGILDPYQLRFS CHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHCCCCEEEEEC PDMKWFVTAANRLNHIDIYRWDGKDIVLAKRVATGKTPSHLWIDSKSSTIYSTMQDSDEL CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCE IAVDLASQAIKWRTKTGSIPADVYGTADDKFMLVGLTGSDAVEVYDVSGKEPKRSKVIKT EEEEEHHHHHEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEECCCCCCCHHHEEEC GAGAHAFRALGDRRHVLVSNRVANSISKIDLQTLEVVDSYPAPGGPDCIDVSRDGKQILV CCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE TSRWARKLTVIDIASHKVVRQINVGKSPHGVWTLDHAPR EECCCCEEEEEEECCCCEEHEECCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA