| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787662
Identifier: 91787662
GI number: 91787662
Start: 1838629
End: 1839606
Strand: Direct
Name: 91787662
Synonym: Bpro_1780
Alternate gene names: NA
Gene position: 1838629-1839606 (Clockwise)
Preceding gene: 91787661
Following gene: 91787663
Centisome position: 35.36
GC content: 59.2
Gene sequence:
>978_bases ATGAAACGCAGATGGATCATGGCTGCCGTGGCAGCCTTGCTGGGCAGCTTTTGCCTGGCGCAAACCCCAAGCACCTGGAA GCTGGCCACGGGTTACCGGGCCGAGTCTTTCCATACGCTAAACATCATGCAGTTTTCGCGCGATGTCGAGCAGGCCACGG CCGGCCAGCTGCTCATTCAGGTGCACGCCAACAACACGCTGGCCAAGCTCAATGACATCAGCCAGGCGGTGCAGCAGGGC AAAGCCGAGGCCGGTGAAACCATCATGAGCAGCCTCGCCAAGGACATTGCGATTGCCGGTGCCGACTCTGTGCCGTTTGT GGTGAACTCCTACAAGGACGCGCAACGCCTGTGGAAGCTGCAGCGCCCCGGTATTGAAAAGCACTTCACCGAGCGCGGCT TGAAGCTGCTGTATGCCGTGCCCTGGCCACCGCAGGGCCTGCACTCCAGCAAGCCGGTTCGGGGCCTGGCCGACTTCAAA GGCACGCAGATGCGCACTTACAACCAGACCACCTTGCGAATTGCCGAAATGCTGGGAGCCAAGCCGGTTGACGTTGCCAT GGTCGACGTGGGTCAGGCGCTGACCGAAGGCCGCATGGACAACATGATCACCTCGGCGCTGACGGGGGTTGAAAACAAGG TCTGGGGCTCGATCAGGTACTACTACGAGATCAATGCATGGTTTCCCAAAAACGTGGTGTTTGTCAGCAGCAAGGCCTTT GAGGCCCTCAGGCCCGAGGTGCGCAGCACCGTCCTCAAGGCTGCAACTGATGCAGAAGTCCGCGGCTGGCTGGCCAGCCA GGCGCTGGCCATGAGCGCTACGCAAGAGCTGCGTAAAAACGGCATCAGGATTGAGCGCATTCCCGCAGACCTGGAGCAGG AAGTCAAGCGCATGGGTGAGAAGTTTTCGCGCGAGTGGGTACGATCTGTTGGCAATGAAGCCAACAATATCTTTGTGCCT TACTACCTTGTGCAATAA
Upstream 100 bases:
>100_bases TGGTGATGGGAAAAGTCAAATGACAACCGGGTGCCGAGTGCTTGGCAGTGCGGTGGCCCTTGCAAGCGCGCATTCATCCT GCCACCGCTAAGGACTTCCC
Downstream 100 bases:
>100_bases GCTGGCCCTCAGTACAAGTACAAGTTCAAGTTGCATCAAGTCGCAGCTATCTTTTCGCAGCCCCTTTTTACCGTTACCGT ATTCTTTAGAAAAGATTGTT
Product: TRAP dicarboxylate transporter subunit DctP
Products: NA
Alternate protein names: TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter-DctP Subunit; TRAP Dicarboxylate Transporter DctP Subunit; Signal Peptide Protein; Exported Protein; Twin-Arginine Translocation Pathway Signal; Trap Dicarboxylate Transporter Dctp Subunit; TRAP Dicarboxylate Transporter; Trap Dicarboxylate Transporter-Dctp Subunit; TRAP-Type C4-Dicarboxylate Transporter Periplasmic Protein; Secreted Protein
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MKRRWIMAAVAALLGSFCLAQTPSTWKLATGYRAESFHTLNIMQFSRDVEQATAGQLLIQVHANNTLAKLNDISQAVQQG KAEAGETIMSSLAKDIAIAGADSVPFVVNSYKDAQRLWKLQRPGIEKHFTERGLKLLYAVPWPPQGLHSSKPVRGLADFK GTQMRTYNQTTLRIAEMLGAKPVDVAMVDVGQALTEGRMDNMITSALTGVENKVWGSIRYYYEINAWFPKNVVFVSSKAF EALRPEVRSTVLKAATDAEVRGWLASQALAMSATQELRKNGIRIERIPADLEQEVKRMGEKFSREWVRSVGNEANNIFVP YYLVQ
Sequences:
>Translated_325_residues MKRRWIMAAVAALLGSFCLAQTPSTWKLATGYRAESFHTLNIMQFSRDVEQATAGQLLIQVHANNTLAKLNDISQAVQQG KAEAGETIMSSLAKDIAIAGADSVPFVVNSYKDAQRLWKLQRPGIEKHFTERGLKLLYAVPWPPQGLHSSKPVRGLADFK GTQMRTYNQTTLRIAEMLGAKPVDVAMVDVGQALTEGRMDNMITSALTGVENKVWGSIRYYYEINAWFPKNVVFVSSKAF EALRPEVRSTVLKAATDAEVRGWLASQALAMSATQELRKNGIRIERIPADLEQEVKRMGEKFSREWVRSVGNEANNIFVP YYLVQ >Mature_325_residues MKRRWIMAAVAALLGSFCLAQTPSTWKLATGYRAESFHTLNIMQFSRDVEQATAGQLLIQVHANNTLAKLNDISQAVQQG KAEAGETIMSSLAKDIAIAGADSVPFVVNSYKDAQRLWKLQRPGIEKHFTERGLKLLYAVPWPPQGLHSSKPVRGLADFK GTQMRTYNQTTLRIAEMLGAKPVDVAMVDVGQALTEGRMDNMITSALTGVENKVWGSIRYYYEINAWFPKNVVFVSSKAF EALRPEVRSTVLKAATDAEVRGWLASQALAMSATQELRKNGIRIERIPADLEQEVKRMGEKFSREWVRSVGNEANNIFVP YYLVQ
Specific function: Unknown
COG id: COG1638
COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36283; Mature: 36283
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRWIMAAVAALLGSFCLAQTPSTWKLATGYRAESFHTLNIMQFSRDVEQATAGQLLIQ CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHCEEEEE VHANNTLAKLNDISQAVQQGKAEAGETIMSSLAKDIAIAGADSVPFVVNSYKDAQRLWKL EECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHHHCHHHHHHHHHH QRPGIEKHFTERGLKLLYAVPWPPQGLHSSKPVRGLADFKGTQMRTYNQTTLRIAEMLGA CCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHCC KPVDVAMVDVGQALTEGRMDNMITSALTGVENKVWGSIRYYYEINAWFPKNVVFVSSKAF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEEEECCCCCCEEEEECHHH EALRPEVRSTVLKAATDAEVRGWLASQALAMSATQELRKNGIRIERIPADLEQEVKRMGE HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH KFSREWVRSVGNEANNIFVPYYLVQ HHHHHHHHHHCCCCCCEEEEEEEEC >Mature Secondary Structure MKRRWIMAAVAALLGSFCLAQTPSTWKLATGYRAESFHTLNIMQFSRDVEQATAGQLLIQ CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHCEEEEE VHANNTLAKLNDISQAVQQGKAEAGETIMSSLAKDIAIAGADSVPFVVNSYKDAQRLWKL EECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHHHCHHHHHHHHHH QRPGIEKHFTERGLKLLYAVPWPPQGLHSSKPVRGLADFKGTQMRTYNQTTLRIAEMLGA CCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHCC KPVDVAMVDVGQALTEGRMDNMITSALTGVENKVWGSIRYYYEINAWFPKNVVFVSSKAF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEEEECCCCCCEEEEECHHH EALRPEVRSTVLKAATDAEVRGWLASQALAMSATQELRKNGIRIERIPADLEQEVKRMGE HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH KFSREWVRSVGNEANNIFVPYYLVQ HHHHHHHHHHCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA