Click here to switch to the map view.

The map label for this gene is xseB

Identifier: 91787627

GI number: 91787627

Start: 1805207

End: 1805488

Strand: Direct

Name: xseB

Synonym: Bpro_1745

Alternate gene names: 91787627

Gene position: 1805207-1805488 (Clockwise)

Preceding gene: 91787617

Following gene: 91787628

Centisome position: 34.71

GC content: 62.41

Gene sequence:

>282_bases
ATGGCCAAAAGCTCCTCTTCCTCTTCCCCTTCCCCTGCTGCCGCTTCTGCGGCCACCACATCATCGGCTCCTCCATTACC
TGCCAGCTATGAGGCTGCCCTGCAGGAGCTTGAGGGGCTGGTGGCTGGTCTCGAGTCGGGCCAGTTGCCGCTGGACCAAT
TGCTCACGGGCTACCAACGCGGGGCGCAGTTGCTGAAGTTCTGCCGCGACAAGCTTGAGGCGGTGGAAACCCAGATCAAG
GTCCTGGAGGGCACGGAGCTCAAGCCCTGGGTGCAAGAGTAG

Upstream 100 bases:

>100_bases
TGGATCGTCATCGGATAATAGTGCTGTGCCTCTGGAGAACCGGCCGGGGAGCCTAAAACGGACCTGTAACGGCCTAAAAT
CAGACCTTCACCCAATTGCC

Downstream 100 bases:

>100_bases
GGTAAGGACAAGAGTAAGCGTAATTCGCAGGGTCATCCCTGAATACAAGTCATCAGATACAGATACAAGTCATAGAGACC
ATAGCTTGAACGCCCCTGAA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAKSSSSSSPSPAAASAATTSSAPPLPASYEAALQELEGLVAGLESGQLPLDQLLTGYQRGAQLLKFCRDKLEAVETQIK
VLEGTELKPWVQE

Sequences:

>Translated_93_residues
MAKSSSSSSPSPAAASAATTSSAPPLPASYEAALQELEGLVAGLESGQLPLDQLLTGYQRGAQLLKFCRDKLEAVETQIK
VLEGTELKPWVQE
>Mature_92_residues
AKSSSSSSPSPAAASAATTSSAPPLPASYEAALQELEGLVAGLESGQLPLDQLLTGYQRGAQLLKFCRDKLEAVETQIKV
LEGTELKPWVQE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_POLSJ (Q12CR1)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_548579.1
- ProteinModelPortal:   Q12CR1
- SMR:   Q12CR1
- STRING:   Q12CR1
- GeneID:   4015608
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_1745
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   AEPASYE
- ProtClustDB:   CLSK723367
- BioCyc:   PSP296591:BPRO_1745-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9745; Mature: 9614

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSSSSSSPSPAAASAATTSSAPPLPASYEAALQELEGLVAGLESGQLPLDQLLTGYQR
CCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GAQLLKFCRDKLEAVETQIKVLEGTELKPWVQE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKSSSSSSPSPAAASAATTSSAPPLPASYEAALQELEGLVAGLESGQLPLDQLLTGYQR
CCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GAQLLKFCRDKLEAVETQIKVLEGTELKPWVQE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA