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The map label for this gene is pocR [H]

Identifier: 91787613

GI number: 91787613

Start: 1788793

End: 1789701

Strand: Direct

Name: pocR [H]

Synonym: Bpro_1731

Alternate gene names: 91787613

Gene position: 1788793-1789701 (Clockwise)

Preceding gene: 91787611

Following gene: 91787614

Centisome position: 34.4

GC content: 62.6

Gene sequence:

>909_bases
ATGACAGACATCAAGACCTATGGCATGTCCGAGCGCGCGGACCATCTCGACTTTGATATCCGGTCGCAACTGGTGCGGCC
GCCGCTGGTGCGCCCGCATCGACACGAATATTTCCAGATCCAGATCAGCCTGCAGGGTGATACCGAGCAGAATGTGGCCG
GTACCGTGCGGCCATTCCGGCGCGGTTACCTCAGCTTCATCCTGCCTTACCGCGTGCATGTGATCCCGCACCCGGAGGGT
TCGCGCTACGTCATCATCAACATGGCGCAGCAGTTCCTGCGGCCCGGGCTGGATGTGGATCCGCTGGATCTGGAAGACGT
GCCGCTGACCAGGGCGCCCGAGCTGGCACCGTTTCTCTTTCAGGAATACACCGACTTTTATTTTTCGGAGGACGAGTTTG
CTGACGTTGAAGCCCTGCTGGACAAGCTGGCCCATGAAAACGCCAACCGCCGCTTCGGCTCGGTGGAAATCATCCGCGGC
CTTATGCTGCAACTGCTGGGGCTGACCTGTCGCAAGTTTGAAGCCGACCTGCTGCGCTTGTCAGCCAGCCAGGCGCAACA
GGGCAGCCGGCGGGCCGGCCTGCAACGGGCAGTCCGCTACATCCGCGAGCATCTGGCGGGCGAAATCACGCTGGCCGATG
CCGCTGCGGCGGCCTTTCTGTCTCCCAATTACCTCGCGCATCTGCTGAAAAAAGAAACCGGCAAGACCTTCACCGATCTG
GTGACGGAGCGGCGCCTGGAGTTTGCGCAGGAGTTGCTGGCGCACAGCAGCCAGCGCATTGCCGCCGTCGCCCATGCGTC
GGGTTTTGCCGACGAGGCCTATTTCGCGCGGCGCTTTCGCCAGCGCTTCGGCCAGACGCCCAGGACCTTCCGCGACAGCG
TGCGCGCCAAGATTTCCGGCGCAGCCTAA

Upstream 100 bases:

>100_bases
TCGCCAGGACCAGGGCCTGTTTGTGCTATTTTGCACCGCATCAGGCCTCGGTTGGAACACTCGTGCGCCGGTACTGGCCA
ATAAGCTGAGAATACTGCGC

Downstream 100 bases:

>100_bases
GAACCTGTTTACGATCTAAACGGGGCCGCGCAAGCACCTTCTCGGGATGGGATGCAAGGCGCGGTGCGCCGCCCATAGCT
TGGGCTATGGGCAAGCGCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTDIKTYGMSERADHLDFDIRSQLVRPPLVRPHRHEYFQIQISLQGDTEQNVAGTVRPFRRGYLSFILPYRVHVIPHPEG
SRYVIINMAQQFLRPGLDVDPLDLEDVPLTRAPELAPFLFQEYTDFYFSEDEFADVEALLDKLAHENANRRFGSVEIIRG
LMLQLLGLTCRKFEADLLRLSASQAQQGSRRAGLQRAVRYIREHLAGEITLADAAAAAFLSPNYLAHLLKKETGKTFTDL
VTERRLEFAQELLAHSSQRIAAVAHASGFADEAYFARRFRQRFGQTPRTFRDSVRAKISGAA

Sequences:

>Translated_302_residues
MTDIKTYGMSERADHLDFDIRSQLVRPPLVRPHRHEYFQIQISLQGDTEQNVAGTVRPFRRGYLSFILPYRVHVIPHPEG
SRYVIINMAQQFLRPGLDVDPLDLEDVPLTRAPELAPFLFQEYTDFYFSEDEFADVEALLDKLAHENANRRFGSVEIIRG
LMLQLLGLTCRKFEADLLRLSASQAQQGSRRAGLQRAVRYIREHLAGEITLADAAAAAFLSPNYLAHLLKKETGKTFTDL
VTERRLEFAQELLAHSSQRIAAVAHASGFADEAYFARRFRQRFGQTPRTFRDSVRAKISGAA
>Mature_301_residues
TDIKTYGMSERADHLDFDIRSQLVRPPLVRPHRHEYFQIQISLQGDTEQNVAGTVRPFRRGYLSFILPYRVHVIPHPEGS
RYVIINMAQQFLRPGLDVDPLDLEDVPLTRAPELAPFLFQEYTDFYFSEDEFADVEALLDKLAHENANRRFGSVEIIRGL
MLQLLGLTCRKFEADLLRLSASQAQQGSRRAGLQRAVRYIREHLAGEITLADAAAAAFLSPNYLAHLLKKETGKTFTDLV
TERRLEFAQELLAHSSQRIAAVAHASGFADEAYFARRFRQRFGQTPRTFRDSVRAKISGAA

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=136, Percent_Identity=36.7647058823529, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34421; Mature: 34289

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIKTYGMSERADHLDFDIRSQLVRPPLVRPHRHEYFQIQISLQGDTEQNVAGTVRPFR
CCCCCCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
RGYLSFILPYRVHVIPHPEGSRYVIINMAQQFLRPGLDVDPLDLEDVPLTRAPELAPFLF
HHHHHHHHHHEEEEEECCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
QEYTDFYFSEDEFADVEALLDKLAHENANRRFGSVEIIRGLMLQLLGLTCRKFEADLLRL
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASQAQQGSRRAGLQRAVRYIREHLAGEITLADAAAAAFLSPNYLAHLLKKETGKTFTDL
HHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
VTERRLEFAQELLAHSSQRIAAVAHASGFADEAYFARRFRQRFGQTPRTFRDSVRAKISG
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
AA
CC
>Mature Secondary Structure 
TDIKTYGMSERADHLDFDIRSQLVRPPLVRPHRHEYFQIQISLQGDTEQNVAGTVRPFR
CCCCCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
RGYLSFILPYRVHVIPHPEGSRYVIINMAQQFLRPGLDVDPLDLEDVPLTRAPELAPFLF
HHHHHHHHHHEEEEEECCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
QEYTDFYFSEDEFADVEALLDKLAHENANRRFGSVEIIRGLMLQLLGLTCRKFEADLLRL
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASQAQQGSRRAGLQRAVRYIREHLAGEITLADAAAAAFLSPNYLAHLLKKETGKTFTDL
HHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
VTERRLEFAQELLAHSSQRIAAVAHASGFADEAYFARRFRQRFGQTPRTFRDSVRAKISG
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]