| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yoaV [H]
Identifier: 91787518
GI number: 91787518
Start: 1690671
End: 1691678
Strand: Reverse
Name: yoaV [H]
Synonym: Bpro_1636
Alternate gene names: 91787518
Gene position: 1691678-1690671 (Counterclockwise)
Preceding gene: 91787519
Following gene: 91787508
Centisome position: 32.53
GC content: 66.47
Gene sequence:
>1008_bases TTGACCTCATCCACCACCGGGCTGGCATCATCCGCGGCATCATCCGCGGCACCATCCGCGGCACCATCCGCGGCATCACC CGCGACCCTGGCTGCACCCAAAAGCTGGCTGACCGATTTTGTGCTGCTCGCGGCCATCTGGGGTTCGTCCTTTCTCTTCA TGCGCATCAGCACGGGGGAATTCGGCCCGCTGCCGACCGCCGCCGTGCGCGTGGCGATTGCCGCCCTCTTCCTGCTGCCC ATGGTGTGGCTGCGCGGCCTGCTGCCGGAACTGAAGAAAAACTGGAAGCGGACTTTCTTCATCGGCCTGCTCAACTCCGG CATTCCGTTTGCGTGCTTTTCGTTTGCGCTGCTGTCCATCACCACCGGGCTCTCGGCCATTCTGAACGCCACCGTGCCGA TGTTTGGCGCGCTGGTCGCTTGGGCTTGGCTCAAGGACAAACCCAATGTCTCGCGCGTGCTGGGCCTGGTCGTCGGCTTT GCCGGCGTGGCCATGCTGGCCTGGGACAAAGCCACCTTCAAGCCCGACGCCTCGGGCGTGGCGCCTGGCTGGGCCGTGCT GGCCTGCCTGCTGGCCTGCGTGTGCTACGGCGTCTCGGCCAGCTACACCAAGCGCTACCTGTCCGGCCTGCCGCCGCTGG TCACGGCCGCAGGCAGCCAGATCGGCGCCACGCTGGGCCTGGCCCTGCCGGCGCTCTGGCTGTGGCCCGCGCGCATGCCG GGCACCTCGGCCTGGCTGGCCCTGCTGGCCGTCGGCGTGCTGTGCACCGGGCTCGCCTACATCCTGTTTTTCCGGTTGAT CGAGAACGCCGGGCCGCAGCGTGCGCTGTCGGTAACATTTGTGGTGCCGATGTTTGCCGTGCTCTATGGCGTGCTCTTGC TCGGCGAAGCGGTGACAACCTGGATGGTGGTATGCGCTGCCGTGATTGTGTGCGGCACGGCCCTGTCGACCGGGCTGTTG AAGCTGCAGCGCGCACAGCCGTTGAGCACACAACAACCCAAGCCATGA
Upstream 100 bases:
>100_bases TGCTGGGCGCCGACGGCTCGCTCACCGGCTATGCGGGCGGCCTCGACAAAAAAACAGCACTGCTCAAGCTTGAGGGTGCG CTCATGAAGGAGACCCTGAC
Downstream 100 bases:
>100_bases GCTCCGCGCGAAAAACCAAACTAAAGCTGAAGACTGTCAGGCCGAGAAACCCGCTGGTGGCGCCGGCTGCGCGGCGCAAG GCGGGTGCCCACCGCAAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 334
Protein sequence:
>335_residues MTSSTTGLASSAASSAAPSAAPSAASPATLAAPKSWLTDFVLLAAIWGSSFLFMRISTGEFGPLPTAAVRVAIAALFLLP MVWLRGLLPELKKNWKRTFFIGLLNSGIPFACFSFALLSITTGLSAILNATVPMFGALVAWAWLKDKPNVSRVLGLVVGF AGVAMLAWDKATFKPDASGVAPGWAVLACLLACVCYGVSASYTKRYLSGLPPLVTAAGSQIGATLGLALPALWLWPARMP GTSAWLALLAVGVLCTGLAYILFFRLIENAGPQRALSVTFVVPMFAVLYGVLLLGEAVTTWMVVCAAVIVCGTALSTGLL KLQRAQPLSTQQPKP
Sequences:
>Translated_335_residues MTSSTTGLASSAASSAAPSAAPSAASPATLAAPKSWLTDFVLLAAIWGSSFLFMRISTGEFGPLPTAAVRVAIAALFLLP MVWLRGLLPELKKNWKRTFFIGLLNSGIPFACFSFALLSITTGLSAILNATVPMFGALVAWAWLKDKPNVSRVLGLVVGF AGVAMLAWDKATFKPDASGVAPGWAVLACLLACVCYGVSASYTKRYLSGLPPLVTAAGSQIGATLGLALPALWLWPARMP GTSAWLALLAVGVLCTGLAYILFFRLIENAGPQRALSVTFVVPMFAVLYGVLLLGEAVTTWMVVCAAVIVCGTALSTGLL KLQRAQPLSTQQPKP >Mature_334_residues TSSTTGLASSAASSAAPSAAPSAASPATLAAPKSWLTDFVLLAAIWGSSFLFMRISTGEFGPLPTAAVRVAIAALFLLPM VWLRGLLPELKKNWKRTFFIGLLNSGIPFACFSFALLSITTGLSAILNATVPMFGALVAWAWLKDKPNVSRVLGLVVGFA GVAMLAWDKATFKPDASGVAPGWAVLACLLACVCYGVSASYTKRYLSGLPPLVTAAGSQIGATLGLALPALWLWPARMPG TSAWLALLAVGVLCTGLAYILFFRLIENAGPQRALSVTFVVPMFAVLYGVLLLGEAVTTWMVVCAAVIVCGTALSTGLLK LQRAQPLSTQQPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34937; Mature: 34806
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS00310 LAMP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSTTGLASSAASSAAPSAAPSAASPATLAAPKSWLTDFVLLAAIWGSSFLFMRISTGE CCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCC FGPLPTAAVRVAIAALFLLPMVWLRGLLPELKKNWKRTFFIGLLNSGIPFACFSFALLSI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH TTGLSAILNATVPMFGALVAWAWLKDKPNVSRVLGLVVGFAGVAMLAWDKATFKPDASGV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC APGWAVLACLLACVCYGVSASYTKRYLSGLPPLVTAAGSQIGATLGLALPALWLWPARMP CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCC GTSAWLALLAVGVLCTGLAYILFFRLIENAGPQRALSVTFVVPMFAVLYGVLLLGEAVTT CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WMVVCAAVIVCGTALSTGLLKLQRAQPLSTQQPKP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TSSTTGLASSAASSAAPSAAPSAASPATLAAPKSWLTDFVLLAAIWGSSFLFMRISTGE CCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCC FGPLPTAAVRVAIAALFLLPMVWLRGLLPELKKNWKRTFFIGLLNSGIPFACFSFALLSI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH TTGLSAILNATVPMFGALVAWAWLKDKPNVSRVLGLVVGFAGVAMLAWDKATFKPDASGV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC APGWAVLACLLACVCYGVSASYTKRYLSGLPPLVTAAGSQIGATLGLALPALWLWPARMP CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCC GTSAWLALLAVGVLCTGLAYILFFRLIENAGPQRALSVTFVVPMFAVLYGVLLLGEAVTT CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WMVVCAAVIVCGTALSTGLLKLQRAQPLSTQQPKP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]