| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is boxD [H]
Identifier: 91787507
GI number: 91787507
Start: 1677436
End: 1678992
Strand: Reverse
Name: boxD [H]
Synonym: Bpro_1625
Alternate gene names: 91787507
Gene position: 1678992-1677436 (Counterclockwise)
Preceding gene: 91787508
Following gene: 91787506
Centisome position: 32.29
GC content: 68.21
Gene sequence:
>1557_bases ATGACTGAACTGATTTCCAACTTCCTCGGCGGCCGCTGGCAGGCCGGTAGCGGCGCCGGCACGCCCCTGTTCGACCCCAC CCTCGGCACCGAGCTGGTCCGCGTGGACGCCACCGGGCTTGATCTCGCGGCAGGCTTTGCGTTTGCACGCGAGCAGGGCC GCGCAGCGCTGCAGCGCCTGACCTACCGCGAGCGCGCCGCGATGCTGGCCGCCGCCGTCAAGGTGCTGCAGGCGAACCGC GATGCCTACTATGACATCGCCACGGCCAACAGCGGCACCGTCAAGAACGACTCGACGGTGGACATCGACGGCGGCATCTT CACGCTCGGCAACTACGCAAAACTCGGCGACTCACTGGGCGACCGCCGCTTTCTGCTCGACGGCGAGATGACTCGGCTGG GCAAGGAAGACCTGTTCCAGTCGCAACATGTGCTGACGCCCACGCGGGGCATCGCCCTGTTCATCAACGCCTTCAACTTT CCGAGCTGGGGCCTGTGGGAAAAGGCGGCGCCCGCGCTGCTGTCCGGCGTGCCGGTGATCGTCAAGCCCGCCACCACCAC AGCCTGGCTCACCCAGCGCATGGTGCAGGACGTGGTCGAGGCCGGCATCTTCCCGGCCGGCGCACTGTCGGTCGTGTGCG GCAGCTCTGCGGGCCTGATGGACGCGCTGCAACCTTTTGACGTCGTGTCGTTCACCGGATCGGCAGAAACAGCAGCCGTG ATCCGCTCGCATCCCGCCGTGACGCAACGCTCGGTGCGCGTCAACATCGAAGCGGACAGCCTCAACTCGGCCCTGCTGCT GCCCGGTGAAGCCGCTGGCAGCGCCGCCTTCGATTTGCTGGTCAAGGAAGTGGTGCGCGAGATGACGGTCAAATCAGGCC AGAAATGCACCGCGATTCGCCGCGTCTTCGTCCCCGAGGACCTGTATGGCCCGGTGGCCGAGGCGATCGCCGCGCGCCTG TCCAAAACCGTTGTCGGCAACCCGCGCAATGAAACCGTTCGCATGGGCGCGCTGGTTAACCGCGCGCAGCTGGCCAGCGT CCGCGAGGGCCTGGCCCACCTGCAAACCCAAGCCGAGCTGCTGCACGATGGCAGCACGCACGCGCTGGTCGATGCCGACC CCGCCGTGGCTTGCTGTGTCGGGCCCACGCTGTTGGGCGCCCGCGATGCCGACGCGGCGGACCGCATCCACGACACCGAA GTGTTTGGCCCGGTGGCCACCCTGATGCCTTATCGCCATGCCGCCAGCGACATGGCTCACGCGCTCACTCTGGTGCGTCG CGGCCACGGCTCGCTGGTGGCCTCGCTCTATGGCAGCGACCCGGCCGCGCTGGCCGCCACCGCGCTGGAGCTGGCCGACA GCCACGGCCGCGTGCATGTGATCTCGCCCGATGTGGCGCAACTGCACACCGGCCATGGCAATGTGATGCCGCAGTCGCTC CACGGTGGCCCCGGGCGCGCGGGCGGCGGAGAGGAACTCGGTGGCGTGCGTGCCCTGAACTTCTACCACCGCCGCAGCGC GGTGCAAGCCAGCACCGCCGTGCTCAAAACCCTCTAA
Upstream 100 bases:
>100_bases TGCGCAGGCAGGTTCGGAGCCGCAGGCTCCAGCCCCTTGGGGGCTAATTTCCCTTGGGGCGGCCCGGCGGCGTCACGATT ACTCCTCACGAAAGAATTGC
Downstream 100 bases:
>100_bases GCACCGCCGACTGCCCTGCAAAAATCAAGGAGACAGACTTGACCCCCACCCTCCCCGTCGCGCCGCCCGGCGCGCGCTTT AACTTTGCCCACCACCTGAT
Product: aldehyde dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MTELISNFLGGRWQAGSGAGTPLFDPTLGTELVRVDATGLDLAAGFAFAREQGRAALQRLTYRERAAMLAAAVKVLQANR DAYYDIATANSGTVKNDSTVDIDGGIFTLGNYAKLGDSLGDRRFLLDGEMTRLGKEDLFQSQHVLTPTRGIALFINAFNF PSWGLWEKAAPALLSGVPVIVKPATTTAWLTQRMVQDVVEAGIFPAGALSVVCGSSAGLMDALQPFDVVSFTGSAETAAV IRSHPAVTQRSVRVNIEADSLNSALLLPGEAAGSAAFDLLVKEVVREMTVKSGQKCTAIRRVFVPEDLYGPVAEAIAARL SKTVVGNPRNETVRMGALVNRAQLASVREGLAHLQTQAELLHDGSTHALVDADPAVACCVGPTLLGARDADAADRIHDTE VFGPVATLMPYRHAASDMAHALTLVRRGHGSLVASLYGSDPAALAATALELADSHGRVHVISPDVAQLHTGHGNVMPQSL HGGPGRAGGGEELGGVRALNFYHRRSAVQASTAVLKTL
Sequences:
>Translated_518_residues MTELISNFLGGRWQAGSGAGTPLFDPTLGTELVRVDATGLDLAAGFAFAREQGRAALQRLTYRERAAMLAAAVKVLQANR DAYYDIATANSGTVKNDSTVDIDGGIFTLGNYAKLGDSLGDRRFLLDGEMTRLGKEDLFQSQHVLTPTRGIALFINAFNF PSWGLWEKAAPALLSGVPVIVKPATTTAWLTQRMVQDVVEAGIFPAGALSVVCGSSAGLMDALQPFDVVSFTGSAETAAV IRSHPAVTQRSVRVNIEADSLNSALLLPGEAAGSAAFDLLVKEVVREMTVKSGQKCTAIRRVFVPEDLYGPVAEAIAARL SKTVVGNPRNETVRMGALVNRAQLASVREGLAHLQTQAELLHDGSTHALVDADPAVACCVGPTLLGARDADAADRIHDTE VFGPVATLMPYRHAASDMAHALTLVRRGHGSLVASLYGSDPAALAATALELADSHGRVHVISPDVAQLHTGHGNVMPQSL HGGPGRAGGGEELGGVRALNFYHRRSAVQASTAVLKTL >Mature_517_residues TELISNFLGGRWQAGSGAGTPLFDPTLGTELVRVDATGLDLAAGFAFAREQGRAALQRLTYRERAAMLAAAVKVLQANRD AYYDIATANSGTVKNDSTVDIDGGIFTLGNYAKLGDSLGDRRFLLDGEMTRLGKEDLFQSQHVLTPTRGIALFINAFNFP SWGLWEKAAPALLSGVPVIVKPATTTAWLTQRMVQDVVEAGIFPAGALSVVCGSSAGLMDALQPFDVVSFTGSAETAAVI RSHPAVTQRSVRVNIEADSLNSALLLPGEAAGSAAFDLLVKEVVREMTVKSGQKCTAIRRVFVPEDLYGPVAEAIAARLS KTVVGNPRNETVRMGALVNRAQLASVREGLAHLQTQAELLHDGSTHALVDADPAVACCVGPTLLGARDADAADRIHDTEV FGPVATLMPYRHAASDMAHALTLVRRGHGSLVASLYGSDPAALAATALELADSHGRVHVISPDVAQLHTGHGNVMPQSLH GGPGRAGGGEELGGVRALNFYHRRSAVQASTAVLKTL
Specific function: Catalyzes the NADP-dependent oxidation of 3,4- dehydroadipyl-CoA semialdehyde to form cis-3,4-dehydroadipyl-CoA [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldehyde dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI21361176, Length=508, Percent_Identity=24.8031496062992, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI25777724, Length=495, Percent_Identity=24.040404040404, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI25777732, Length=509, Percent_Identity=26.1296660117878, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI153266822, Length=502, Percent_Identity=22.9083665338645, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI115387104, Length=522, Percent_Identity=25.4789272030651, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI12007648, Length=418, Percent_Identity=24.8803827751196, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI25777730, Length=499, Percent_Identity=25.250501002004, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI25777728, Length=435, Percent_Identity=24.1379310344828, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI4507229, Length=455, Percent_Identity=24.8351648351648, Blast_Score=82, Evalue=9e-16, Organism=Escherichia coli, GI1787653, Length=515, Percent_Identity=44.8543689320388, Blast_Score=373, Evalue=1e-104, Organism=Escherichia coli, GI1789015, Length=419, Percent_Identity=24.3436754176611, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1786504, Length=530, Percent_Identity=24.7169811320755, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87082295, Length=446, Percent_Identity=23.7668161434978, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1787715, Length=501, Percent_Identity=21.9560878243513, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081896, Length=352, Percent_Identity=29.2613636363636, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1787684, Length=323, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787558, Length=447, Percent_Identity=23.489932885906, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551164, Length=466, Percent_Identity=22.5321888412017, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17534447, Length=365, Percent_Identity=25.2054794520548, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115532534, Length=365, Percent_Identity=25.2054794520548, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562198, Length=508, Percent_Identity=23.0314960629921, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI32564151, Length=287, Percent_Identity=26.8292682926829, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324950, Length=453, Percent_Identity=25.1655629139073, Blast_Score=91, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6320917, Length=365, Percent_Identity=26.5753424657534, Blast_Score=83, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6325196, Length=429, Percent_Identity=24.7086247086247, Blast_Score=71, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319478, Length=423, Percent_Identity=22.2222222222222, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24650465, Length=490, Percent_Identity=25.7142857142857, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI20129399, Length=423, Percent_Identity=26.7139479905437, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24668425, Length=366, Percent_Identity=24.3169398907104, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24668417, Length=366, Percent_Identity=24.3169398907104, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24668413, Length=366, Percent_Identity=24.3169398907104, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI281362580, Length=399, Percent_Identity=25.5639097744361, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI62472918, Length=399, Percent_Identity=25.5639097744361, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI62472926, Length=399, Percent_Identity=25.5639097744361, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI62472936, Length=399, Percent_Identity=25.5639097744361, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI21356737, Length=399, Percent_Identity=25.5639097744361, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 [H]
Pfam domain/function: PF00171 Aldedh [H]
EC number: =1.2.1.77 [H]
Molecular weight: Translated: 54432; Mature: 54301
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELISNFLGGRWQAGSGAGTPLFDPTLGTELVRVDATGLDLAAGFAFAREQGRAALQRL CHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH TYRERAAMLAAAVKVLQANRDAYYDIATANSGTVKNDSTVDIDGGIFTLGNYAKLGDSLG HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCHHHHCCCCC DRRFLLDGEMTRLGKEDLFQSQHVLTPTRGIALFINAFNFPSWGLWEKAAPALLSGVPVI CCEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEE VKPATTTAWLTQRMVQDVVEAGIFPAGALSVVCGSSAGLMDALQPFDVVSFTGSAETAAV EECCCHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCHHHHCCCCCEEEECCCCHHHHH IRSHPAVTQRSVRVNIEADSLNSALLLPGEAAGSAAFDLLVKEVVREMTVKSGQKCTAIR HHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH RVFVPEDLYGPVAEAIAARLSKTVVGNPRNETVRMGALVNRAQLASVREGLAHLQTQAEL HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LHDGSTHALVDADPAVACCVGPTLLGARDADAADRIHDTEVFGPVATLMPYRHAASDMAH HHCCCCCEEEECCCCEEEECCCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ALTLVRRGHGSLVASLYGSDPAALAATALELADSHGRVHVISPDVAQLHTGHGNVMPQSL HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCC HGGPGRAGGGEELGGVRALNFYHRRSAVQASTAVLKTL CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TELISNFLGGRWQAGSGAGTPLFDPTLGTELVRVDATGLDLAAGFAFAREQGRAALQRL HHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH TYRERAAMLAAAVKVLQANRDAYYDIATANSGTVKNDSTVDIDGGIFTLGNYAKLGDSLG HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCHHHHCCCCC DRRFLLDGEMTRLGKEDLFQSQHVLTPTRGIALFINAFNFPSWGLWEKAAPALLSGVPVI CCEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEE VKPATTTAWLTQRMVQDVVEAGIFPAGALSVVCGSSAGLMDALQPFDVVSFTGSAETAAV EECCCHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCHHHHCCCCCEEEECCCCHHHHH IRSHPAVTQRSVRVNIEADSLNSALLLPGEAAGSAAFDLLVKEVVREMTVKSGQKCTAIR HHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH RVFVPEDLYGPVAEAIAARLSKTVVGNPRNETVRMGALVNRAQLASVREGLAHLQTQAEL HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LHDGSTHALVDADPAVACCVGPTLLGARDADAADRIHDTEVFGPVATLMPYRHAASDMAH HHCCCCCEEEECCCCEEEECCCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ALTLVRRGHGSLVASLYGSDPAALAATALELADSHGRVHVISPDVAQLHTGHGNVMPQSL HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCC HGGPGRAGGGEELGGVRALNFYHRRSAVQASTAVLKTL CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12399500 [H]