| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787423
Identifier: 91787423
GI number: 91787423
Start: 1585982
End: 1586362
Strand: Reverse
Name: 91787423
Synonym: Bpro_1533
Alternate gene names: NA
Gene position: 1586362-1585982 (Counterclockwise)
Preceding gene: 91787424
Following gene: 91787421
Centisome position: 30.51
GC content: 62.73
Gene sequence:
>381_bases ATGGAAATCAAGCCCATCCACACCGACGCCGACTACAAGGCGACGCTGCGGGAAGTGTCCGGCCTTATCGATCTGGACCC GGAACCCGCCACGCCAGAGGGCGACCGCCTCGACATCCTAGCGACGCTCGTGCAGGCCTATGAAGCGAAGCACTACCCGA TCGCCCCACCCGACCCTATCGAGGCGATCAAGTTCCGCATGGATCAAGAGGGTCTGACGGTCAAGGATTTGGAGTCCATC ATCGGGCCGTCGCACCGCGTCTATGAGGTGCTGAATCGCACGCGCCCGCTAACGCTGCACATGATCCGTCGCCTGCATCG CCGGCTGCACATCCCCGCCGAGGTGCTGATCCACCAAGGCGAAGAGGTCGCCATCGCTTGA
Upstream 100 bases:
>100_bases TACAAAATGCAGTGGGTCTACGTCAAGTTCGTCGGCACACACAAGCACTACGACACCATCGACGCTGAAACCGTCGAGCA ATTTTGAAAGGAGTTTGAGC
Downstream 100 bases:
>100_bases CCGGCCAGCCTGCCGGAGTTTTTAACGCAATGGAGTGCGACAAGTTTCAGCGCAAGTTGTTTCCTGGCGCAAAGCCTCCA GCCCTTGAGGCATGTCAGCC
Product: transcription regulator
Products: NA
Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator; XRE Family Transcriptional Regulator; Transcription Regulator; Transcription Regulator With HTH Domain Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Xre Family; Transcription Regulator Containing HTH Domain; Transcription Regulator Protein; Transcritional Regulatior Protein; Transcription Regulator Containing Helix Turn Helix Domain; HTH_3 Family Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator YgjM; Transcriptional Regulator Protein; Transcription Regulator With HTH Domain-Containing Protein
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MEIKPIHTDADYKATLREVSGLIDLDPEPATPEGDRLDILATLVQAYEAKHYPIAPPDPIEAIKFRMDQEGLTVKDLESI IGPSHRVYEVLNRTRPLTLHMIRRLHRRLHIPAEVLIHQGEEVAIA
Sequences:
>Translated_126_residues MEIKPIHTDADYKATLREVSGLIDLDPEPATPEGDRLDILATLVQAYEAKHYPIAPPDPIEAIKFRMDQEGLTVKDLESI IGPSHRVYEVLNRTRPLTLHMIRRLHRRLHIPAEVLIHQGEEVAIA >Mature_126_residues MEIKPIHTDADYKATLREVSGLIDLDPEPATPEGDRLDILATLVQAYEAKHYPIAPPDPIEAIKFRMDQEGLTVKDLESI IGPSHRVYEVLNRTRPLTLHMIRRLHRRLHIPAEVLIHQGEEVAIA
Specific function: Unknown
COG id: COG5499
COG function: function code K; Predicted transcription regulator containing HTH domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14312; Mature: 14312
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIKPIHTDADYKATLREVSGLIDLDPEPATPEGDRLDILATLVQAYEAKHYPIAPPDPI CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHH EAIKFRMDQEGLTVKDLESIIGPSHRVYEVLNRTRPLTLHMIRRLHRRLHIPAEVLIHQG HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCC EEVAIA CEEECC >Mature Secondary Structure MEIKPIHTDADYKATLREVSGLIDLDPEPATPEGDRLDILATLVQAYEAKHYPIAPPDPI CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHH EAIKFRMDQEGLTVKDLESIIGPSHRVYEVLNRTRPLTLHMIRRLHRRLHIPAEVLIHQG HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCC EEVAIA CEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA