| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787371
Identifier: 91787371
GI number: 91787371
Start: 1529090
End: 1529986
Strand: Reverse
Name: 91787371
Synonym: Bpro_1477
Alternate gene names: NA
Gene position: 1529986-1529090 (Counterclockwise)
Preceding gene: 91787372
Following gene: 91787370
Centisome position: 29.42
GC content: 65.66
Gene sequence:
>897_bases TTGCACCAGGAAACCAACGAAAACATGAAAACCCAAGCCACCACCCCCGCAGGCCGCAGGGCCAGCGCCGCCTTTCCCCG CTTGACCGTCGTGCTGACCTTCCTGATGGAGAACTGGTCCGTCGGCAAGGCGCCGCCCTATTCGCCCATGACCAGCCCGC CCAAGGCCGGCGAGATCGACCGAGCCGGCATTCTCTGGGCCAATTACGGCGGGCGATCCGGCATTGCCAGGCTGATGCGG ATCGCCGAACGCCACGGCGTGTCAGGAACGGTCTGCGTGAACGCGCGCTCGGCGGAGCTGTTTCCCGAGACGGTCAGGCA CATCGTGAAGTCGGGCTTTGAACTGGGCGGCCACAACTATGCGCAAGACGAGGTGCTGTCCGGCCTGAACGAGGCCGACG AGCGCGCGCTGATCCAGAAGAGCCTGCGCATCCTGCAGGAAGTCTCTAGCGTGCGCCCCACCGGCTGGCTGAGCTCCACC ATCGCGACCACGGAGCGCACGGCCGACCTGCTGACCCAGGAGGGCCTGCTCTGGCACGGCGACTACAACGACATCGACCA GCCGCAGCAGGTGGCGACGCCGTCCGGCCGCATCGTGGCGATTCCGCACAGCGACTATGCCGACAACCGCGTGCTGCGCG GCGCGCCGGACGACTGGTACCACTGCTACAAGGACATGTTCGACTACCTCTACCGCCAGGAGTCGGGCTCGCTCATCAAC ATCACCATGCACGGCAACTTCGGCGGCCGGCCGCTGATGTCGGCGCAGCTGGACAAGCTGCTGACCTACATGCTGGCCCA TGACGAGGTCTGGGTGCCGCGGCATGACGAGTTGGCCCATTGGGTCAACGAGCACGGCATAGCCGAAACGCCCTTCATCC AGCGCTTTGCGGCCTGA
Upstream 100 bases:
>100_bases GCCGTCGAAGCCTCGCCCGAAGAGTTCGCCAGGCTGCTGGCCGACAGCACCCAGGTCTACAAGTCCATCGTCCAGAAAGC CGGCATCACGCCCGAATGAA
Downstream 100 bases:
>100_bases GCCGACGCCCACCCACCGTAACAACACCAACAGGAAGCCCGAGACATGATCACCGAGTCTGAACACCGGCAGGCCGCGGA CGCGCTGCTGGAAGCCGGCC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Polysaccharide Deacetylase Family Protein; Urate Catabolism Protein; Chitin Deacetylase; Chitooligosaccharide Deacetylase; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase Family; Chitooligosaccharide Deacetylase Protein; Polysaccharide Deacetylase Domain Protein; Hydrolase; Polysaccharide Deacetylase Protein Pda4B; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Polysaccharide Deacetylase Domain-Containing Protein; Uricase; Saccharide Deacetylase Slightly; Deacetylase
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MHQETNENMKTQATTPAGRRASAAFPRLTVVLTFLMENWSVGKAPPYSPMTSPPKAGEIDRAGILWANYGGRSGIARLMR IAERHGVSGTVCVNARSAELFPETVRHIVKSGFELGGHNYAQDEVLSGLNEADERALIQKSLRILQEVSSVRPTGWLSST IATTERTADLLTQEGLLWHGDYNDIDQPQQVATPSGRIVAIPHSDYADNRVLRGAPDDWYHCYKDMFDYLYRQESGSLIN ITMHGNFGGRPLMSAQLDKLLTYMLAHDEVWVPRHDELAHWVNEHGIAETPFIQRFAA
Sequences:
>Translated_298_residues MHQETNENMKTQATTPAGRRASAAFPRLTVVLTFLMENWSVGKAPPYSPMTSPPKAGEIDRAGILWANYGGRSGIARLMR IAERHGVSGTVCVNARSAELFPETVRHIVKSGFELGGHNYAQDEVLSGLNEADERALIQKSLRILQEVSSVRPTGWLSST IATTERTADLLTQEGLLWHGDYNDIDQPQQVATPSGRIVAIPHSDYADNRVLRGAPDDWYHCYKDMFDYLYRQESGSLIN ITMHGNFGGRPLMSAQLDKLLTYMLAHDEVWVPRHDELAHWVNEHGIAETPFIQRFAA >Mature_298_residues MHQETNENMKTQATTPAGRRASAAFPRLTVVLTFLMENWSVGKAPPYSPMTSPPKAGEIDRAGILWANYGGRSGIARLMR IAERHGVSGTVCVNARSAELFPETVRHIVKSGFELGGHNYAQDEVLSGLNEADERALIQKSLRILQEVSSVRPTGWLSST IATTERTADLLTQEGLLWHGDYNDIDQPQQVATPSGRIVAIPHSDYADNRVLRGAPDDWYHCYKDMFDYLYRQESGSLIN ITMHGNFGGRPLMSAQLDKLLTYMLAHDEVWVPRHDELAHWVNEHGIAETPFIQRFAA
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33299; Mature: 33299
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQETNENMKTQATTPAGRRASAAFPRLTVVLTFLMENWSVGKAPPYSPMTSPPKAGEID CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RAGILWANYGGRSGIARLMRIAERHGVSGTVCVNARSAELFPETVRHIVKSGFELGGHNY CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCHHCCCCCC AQDEVLSGLNEADERALIQKSLRILQEVSSVRPTGWLSSTIATTERTADLLTQEGLLWHG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC DYNDIDQPQQVATPSGRIVAIPHSDYADNRVLRGAPDDWYHCYKDMFDYLYRQESGSLIN CCCCCCCCHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEE ITMHGNFGGRPLMSAQLDKLLTYMLAHDEVWVPRHDELAHWVNEHGIAETPFIQRFAA EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCC >Mature Secondary Structure MHQETNENMKTQATTPAGRRASAAFPRLTVVLTFLMENWSVGKAPPYSPMTSPPKAGEID CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RAGILWANYGGRSGIARLMRIAERHGVSGTVCVNARSAELFPETVRHIVKSGFELGGHNY CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCHHCCCCCC AQDEVLSGLNEADERALIQKSLRILQEVSSVRPTGWLSSTIATTERTADLLTQEGLLWHG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC DYNDIDQPQQVATPSGRIVAIPHSDYADNRVLRGAPDDWYHCYKDMFDYLYRQESGSLIN CCCCCCCCHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEE ITMHGNFGGRPLMSAQLDKLLTYMLAHDEVWVPRHDELAHWVNEHGIAETPFIQRFAA EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA