| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is dctA2 [H]
Identifier: 91787315
GI number: 91787315
Start: 1464315
End: 1465646
Strand: Reverse
Name: dctA2 [H]
Synonym: Bpro_1420
Alternate gene names: 91787315
Gene position: 1465646-1464315 (Counterclockwise)
Preceding gene: 91787316
Following gene: 91787314
Centisome position: 28.18
GC content: 64.79
Gene sequence:
>1332_bases ATGCCCAAGTTTTTCCGCTCCCTGTTCGGTCAGGTGCTGCTGGCGCTGATCGTCGGCGTCGTCCTCGGTTTTGTCTGGCC TGACACGGCCGTGCAGCTCAAGCCGCTCGGCGACGGCTTCATCAAGCTCATCAAGATGCTGATCCCGCTGATCGTGTTCT GCGTGGTGGTGCACGGCATCGCCGGCACCGGCGACCTCAAGCGGGTCGGCCGGGTCGGCGTCAAGTCGCTGATCTACTTT GAGGTCGTCACCACCGTCGCGCTGGCGCTGGGCCTGCTGCTGGCCTTCGTGTTCCAGCCCGGCGTGGGCATGAATGTCGA CCCCAAGACGCTCGACGCCAGCGCCATGAGCGCCTACGCCACCAACGCGAGCAAGCTGACCGGCGGCGGCACCGTCGACT TCCTGATGAAGCTGATCCCGACCACGGCGGTGAGCGCCTTTGCCAATGGCGATGTGCTGCAGGTGCTGCTGTTCGCTGTG CTGTTCGGCTGCGCGCTGGCCATGCTGGGCGAGCGCGGCAAGCATGTCAGCAGTTTCATCGAAGACCTGTCCCATGTGCT GTTCAAGACCATGGGCATCATCATCAAGCTGGCGCCCCTGGGCGTGCTGGGAGCCATCGCGTTCACCGTGGGCAAGTACG GCATCGGCTCGCTCAAGCAGCTGGGCATGCTGGTGGTGCTGTTCTATGGCGCGGTGATCATCTTCGTGGTGGTCGTGCTC GGCGCCATCATGCGCCTGTCGGGCTTCAACCTGTTCAAGCTGCTGCGCTACCTGCGCGAGGAACTGATGGTGGTGTTTGC CACCACCTCGTCCGACAGCGTGCTGCCGCAGATCATGGCCAAGCTCAAGCACATGGGCATACGCGACTCCACGGTCGGCC TGGTCATTCCTACCGGCTATTCGTTCAACCTCGACGCATTCTCGATCTACATCACGCTGGCGGCCGTCTTCATTGCCCAG GCCACGAACACACCAATCTCGATGGCCGACCTGCTGACCATCCTGGCGATCTCGCTGGTCACCTCCAAGGGCGCCCATGG TGTGCCGGGCTCGGCGATCGTGGTGCTGGCGGCCACCCTGCAGGCGATTCCGGCCATACCCGCCATCGGCCTGGTGCTGG TGCTGTCGGTGGACTGGTTCATGGGCATCGCCCGCGCCCTGGGCAACCTGATCGGCAACTGCGTGGCCACGGTCGCGGTG GCCGCCTGGGAGGGCGACATCGACCGCGAGCGGGCGCATGCCGTTCTCAATGGTGAACCCCATGCGGTGTTCGACATCGA GGACGAGGAGCCCGCGCCGGCGTCCGTGCCGTTGGCCGCGCCAGTCCGCTAA
Upstream 100 bases:
>100_bases AACCCTGAAATGTTATTTCTCCAGTTTGCCTACATTACTTGTATGCAAGACTTGTGAGCAATCGGCCTTGCTGTTCAGAA ACCCTCTTTCGGAGACTGCC
Downstream 100 bases:
>100_bases AGTCCATGCCATGAGCAGCCAGAACCAGATTTCCCAGCAGGTGGTCGAATCCATCCTCGCGCAGAAGCTCGCCCCCGGCG AGCGCCTGGGCGAGCAGGAG
Product: C4-dicarboxylate transporter DctA
Products: orotate [Cytoplasm]; fumarate [Cytoplasm]; malate [Cytoplasm]; Na (I) [Cytoplasm]; succinate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MPKFFRSLFGQVLLALIVGVVLGFVWPDTAVQLKPLGDGFIKLIKMLIPLIVFCVVVHGIAGTGDLKRVGRVGVKSLIYF EVVTTVALALGLLLAFVFQPGVGMNVDPKTLDASAMSAYATNASKLTGGGTVDFLMKLIPTTAVSAFANGDVLQVLLFAV LFGCALAMLGERGKHVSSFIEDLSHVLFKTMGIIIKLAPLGVLGAIAFTVGKYGIGSLKQLGMLVVLFYGAVIIFVVVVL GAIMRLSGFNLFKLLRYLREELMVVFATTSSDSVLPQIMAKLKHMGIRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQ ATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLQAIPAIPAIGLVLVLSVDWFMGIARALGNLIGNCVATVAV AAWEGDIDRERAHAVLNGEPHAVFDIEDEEPAPASVPLAAPVR
Sequences:
>Translated_443_residues MPKFFRSLFGQVLLALIVGVVLGFVWPDTAVQLKPLGDGFIKLIKMLIPLIVFCVVVHGIAGTGDLKRVGRVGVKSLIYF EVVTTVALALGLLLAFVFQPGVGMNVDPKTLDASAMSAYATNASKLTGGGTVDFLMKLIPTTAVSAFANGDVLQVLLFAV LFGCALAMLGERGKHVSSFIEDLSHVLFKTMGIIIKLAPLGVLGAIAFTVGKYGIGSLKQLGMLVVLFYGAVIIFVVVVL GAIMRLSGFNLFKLLRYLREELMVVFATTSSDSVLPQIMAKLKHMGIRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQ ATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLQAIPAIPAIGLVLVLSVDWFMGIARALGNLIGNCVATVAV AAWEGDIDRERAHAVLNGEPHAVFDIEDEEPAPASVPLAAPVR >Mature_442_residues PKFFRSLFGQVLLALIVGVVLGFVWPDTAVQLKPLGDGFIKLIKMLIPLIVFCVVVHGIAGTGDLKRVGRVGVKSLIYFE VVTTVALALGLLLAFVFQPGVGMNVDPKTLDASAMSAYATNASKLTGGGTVDFLMKLIPTTAVSAFANGDVLQVLLFAVL FGCALAMLGERGKHVSSFIEDLSHVLFKTMGIIIKLAPLGVLGAIAFTVGKYGIGSLKQLGMLVVLFYGAVIIFVVVVLG AIMRLSGFNLFKLLRYLREELMVVFATTSSDSVLPQIMAKLKHMGIRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQA TNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLQAIPAIPAIGLVLVLSVDWFMGIARALGNLIGNCVATVAVA AWEGDIDRERAHAVLNGEPHAVFDIEDEEPAPASVPLAAPVR
Specific function: Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI4827012, Length=497, Percent_Identity=24.1448692152917, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI21314632, Length=399, Percent_Identity=27.8195488721804, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI169790839, Length=451, Percent_Identity=24.1685144124169, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI66773030, Length=375, Percent_Identity=24.5333333333333, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI194239697, Length=455, Percent_Identity=23.0769230769231, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40254478, Length=458, Percent_Identity=24.0174672489083, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI5032093, Length=424, Percent_Identity=25.9433962264151, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI223468564, Length=297, Percent_Identity=25.2525252525253, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI223468566, Length=297, Percent_Identity=25.2525252525253, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI262359914, Length=389, Percent_Identity=23.9074550128535, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI301601644, Length=165, Percent_Identity=29.6969696969697, Blast_Score=76, Evalue=6e-14, Organism=Escherichia coli, GI1789947, Length=415, Percent_Identity=53.0120481927711, Blast_Score=445, Evalue=1e-126, Organism=Escherichia coli, GI1790514, Length=419, Percent_Identity=40.3341288782816, Blast_Score=282, Evalue=4e-77, Organism=Escherichia coli, GI1789473, Length=329, Percent_Identity=22.7963525835866, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788024, Length=418, Percent_Identity=21.7703349282297, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17537407, Length=460, Percent_Identity=25.4347826086956, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI71996953, Length=482, Percent_Identity=23.4439834024896, Blast_Score=105, Evalue=5e-23, Organism=Caenorhabditis elegans, GI193206505, Length=434, Percent_Identity=23.0414746543779, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI193206654, Length=448, Percent_Identity=20.9821428571429, Blast_Score=95, Evalue=7e-20, Organism=Caenorhabditis elegans, GI71983106, Length=480, Percent_Identity=22.7083333333333, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71983099, Length=477, Percent_Identity=22.0125786163522, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17541374, Length=401, Percent_Identity=22.4438902743142, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24583025, Length=427, Percent_Identity=23.8875878220141, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI17137668, Length=427, Percent_Identity=23.8875878220141, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24583023, Length=427, Percent_Identity=23.8875878220141, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI281360483, Length=464, Percent_Identity=25.6465517241379, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI17137666, Length=464, Percent_Identity=25.6465517241379, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI281360481, Length=464, Percent_Identity=25.6465517241379, Blast_Score=89, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 46659; Mature: 46528
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00714 NA_DICARBOXYL_SYMP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFFRSLFGQVLLALIVGVVLGFVWPDTAVQLKPLGDGFIKLIKMLIPLIVFCVVVHGI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC AGTGDLKRVGRVGVKSLIYFEVVTTVALALGLLLAFVFQPGVGMNVDPKTLDASAMSAYA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH TNASKLTGGGTVDFLMKLIPTTAVSAFANGDVLQVLLFAVLFGCALAMLGERGKHVSSFI CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH EDLSHVLFKTMGIIIKLAPLGVLGAIAFTVGKYGIGSLKQLGMLVVLFYGAVIIFVVVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GAIMRLSGFNLFKLLRYLREELMVVFATTSSDSVLPQIMAKLKHMGIRDSTVGLVIPTGY HHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC SFNLDAFSIYITLAAVFIAQATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH QAIPAIPAIGLVLVLSVDWFMGIARALGNLIGNCVATVAVAAWEGDIDRERAHAVLNGEP HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC HAVFDIEDEEPAPASVPLAAPVR CEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure PKFFRSLFGQVLLALIVGVVLGFVWPDTAVQLKPLGDGFIKLIKMLIPLIVFCVVVHGI CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC AGTGDLKRVGRVGVKSLIYFEVVTTVALALGLLLAFVFQPGVGMNVDPKTLDASAMSAYA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH TNASKLTGGGTVDFLMKLIPTTAVSAFANGDVLQVLLFAVLFGCALAMLGERGKHVSSFI CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH EDLSHVLFKTMGIIIKLAPLGVLGAIAFTVGKYGIGSLKQLGMLVVLFYGAVIIFVVVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GAIMRLSGFNLFKLLRYLREELMVVFATTSSDSVLPQIMAKLKHMGIRDSTVGLVIPTGY HHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC SFNLDAFSIYITLAAVFIAQATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH QAIPAIPAIGLVLVLSVDWFMGIARALGNLIGNCVATVAVAAWEGDIDRERAHAVLNGEP HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC HAVFDIEDEEPAPASVPLAAPVR CEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: orotate [Periplasm]; fumarate [Periplasm]; malate [Periplasm]; Na (I) [Periplasm]; succinate [Periplasm] [C]
Specific reaction: Na (I) [Periplasm] + orotate [Periplasm] = Na (I) [Cytoplasm] + orotate [Cytoplasm] Na (I) [Periplasm] + fumarate [Periplasm] = Na (I) [Cytoplasm] + fumarate [Cytoplasm] Na (I) [Periplasm] + malate [Periplasm] = Na (I) [Cytoplasm] + malate [Cytoplasm] Na
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]