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The map label for this gene is rnz [H]

Identifier: 91787298

GI number: 91787298

Start: 1440312

End: 1441328

Strand: Reverse

Name: rnz [H]

Synonym: Bpro_1403

Alternate gene names: 91787298

Gene position: 1441328-1440312 (Counterclockwise)

Preceding gene: 91787299

Following gene: 91787296

Centisome position: 27.72

GC content: 64.31

Gene sequence:

>1017_bases
ATGCCTTCCCTGTTCGAACCCCGTCTCGTCAACGACCCATTCGGCGACCCGGCCCTGTATGTCGAGTTCCGTGACGAACG
GCGCTCGCTGTTGTTCGATCTCGGCAACCTCTCCGTGCTGCCGCCGCGCAAGCTGTTGCGGCTGTCGCATGTGTTTGTCA
CCCACGCGCACATGGACCACTTTTCGGGTTTCGATCACCTGCTGCGCGTCGTTCTGGGACGCAAGGCGAGCCTGGTCCTG
TTCGGCGGGCCCGACTTCGTGGCGCAGGTCGAACACAAGCTGCTGGCCTACACCTGGAATATCGTGCACCGCTACGAGGT
CGAGCTGGTGATCGATGTCTGTGAAGTCGGGGTGGACCGGCGCGGGCAGTGGTCCCGCTTTTCGAGTCGGCGTGGGTTTG
CGCGCGAGGCTGGCGCCTCTTTCGAGCTGCCCGACGACGTGCTGCACGAGGAAGCGCTCTTTCGCGTTCGCGGCCGCTTC
GTCGATCACGCTATCCCCTGCCTGGCCTATGTGATCGAGGAGAAAGCCCAGCTCAGGGTGGCGACGGATCGCCTGGCGGC
GCTCGGCGTAACGACGGGACCGTGGTTGCGCGAACTCAAGCATGCGGTTCTGACGGGAGCACCGGATGACACGCCGATTC
AGGTGCAGTGGCGTGATCGGCAAGGCGAGCACGCCATGGAACGCCAGCTCGCCGAGTTGCGCCATCTGGTCCTCGATGTC
GTTCCGGGTCGGCGCATTGGCTATGTCACCGACCTCCGATACACCGACGCCAACATCGAGACGCTCGCGCAACTGCTTGC
AGATGTGGACCTGCTCTTCATCGAAAGCGTATTCCTGGAGGAGGATCAGGCGCATGCGGCACGCAAGAATCACCTGACGG
CCCGCCAGGCCGGCGATATTGCGCGCCGTGTCGGCGCCAGGGCCATCGTGCCATTCCACTACTCGCCACGCTACGCAAGA
CGCTCGGCTGAACTGATCGCCGAAGCGCGGGCGGCCTGGTCGGGTTGGCCGGTGTGA

Upstream 100 bases:

>100_bases
TTAAACAAGCCCGTCAAAATTTGGCTGCCCGCAAACCCGCTTGGAGCGAGAATCATGTGACGCCGATGCCACACGGCCGC
GAACCACACGCTGAACTTCC

Downstream 100 bases:

>100_bases
CTGCGAGCCAGTCTTGAATAGACGCGGCTGGCGGGTCCTGTCGGCCAAACTGATCCGGCATGGATGAGTGGACGAGGCAC
TGGCCGCGTTGGGCTTGTGC

Product: ribonuclease Z

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MPSLFEPRLVNDPFGDPALYVEFRDERRSLLFDLGNLSVLPPRKLLRLSHVFVTHAHMDHFSGFDHLLRVVLGRKASLVL
FGGPDFVAQVEHKLLAYTWNIVHRYEVELVIDVCEVGVDRRGQWSRFSSRRGFAREAGASFELPDDVLHEEALFRVRGRF
VDHAIPCLAYVIEEKAQLRVATDRLAALGVTTGPWLRELKHAVLTGAPDDTPIQVQWRDRQGEHAMERQLAELRHLVLDV
VPGRRIGYVTDLRYTDANIETLAQLLADVDLLFIESVFLEEDQAHAARKNHLTARQAGDIARRVGARAIVPFHYSPRYAR
RSAELIAEARAAWSGWPV

Sequences:

>Translated_338_residues
MPSLFEPRLVNDPFGDPALYVEFRDERRSLLFDLGNLSVLPPRKLLRLSHVFVTHAHMDHFSGFDHLLRVVLGRKASLVL
FGGPDFVAQVEHKLLAYTWNIVHRYEVELVIDVCEVGVDRRGQWSRFSSRRGFAREAGASFELPDDVLHEEALFRVRGRF
VDHAIPCLAYVIEEKAQLRVATDRLAALGVTTGPWLRELKHAVLTGAPDDTPIQVQWRDRQGEHAMERQLAELRHLVLDV
VPGRRIGYVTDLRYTDANIETLAQLLADVDLLFIESVFLEEDQAHAARKNHLTARQAGDIARRVGARAIVPFHYSPRYAR
RSAELIAEARAAWSGWPV
>Mature_337_residues
PSLFEPRLVNDPFGDPALYVEFRDERRSLLFDLGNLSVLPPRKLLRLSHVFVTHAHMDHFSGFDHLLRVVLGRKASLVLF
GGPDFVAQVEHKLLAYTWNIVHRYEVELVIDVCEVGVDRRGQWSRFSSRRGFAREAGASFELPDDVLHEEALFRVRGRFV
DHAIPCLAYVIEEKAQLRVATDRLAALGVTTGPWLRELKHAVLTGAPDDTPIQVQWRDRQGEHAMERQLAELRHLVLDVV
PGRRIGYVTDLRYTDANIETLAQLLADVDLLFIESVFLEEDQAHAARKNHLTARQAGDIARRVGARAIVPFHYSPRYARR
SAELIAEARAAWSGWPV

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 38470; Mature: 38339

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLFEPRLVNDPFGDPALYVEFRDERRSLLFDLGNLSVLPPRKLLRLSHVFVTHAHMDH
CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FSGFDHLLRVVLGRKASLVLFGGPDFVAQVEHKLLAYTWNIVHRYEVELVIDVCEVGVDR
HCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEHHHHHEEHHHCCCCC
RGQWSRFSSRRGFAREAGASFELPDDVLHEEALFRVRGRFVDHAIPCLAYVIEEKAQLRV
CCCHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATDRLAALGVTTGPWLRELKHAVLTGAPDDTPIQVQWRDRQGEHAMERQLAELRHLVLDV
HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
VPGRRIGYVTDLRYTDANIETLAQLLADVDLLFIESVFLEEDQAHAARKNHLTARQAGDI
CCCCCEEEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
ARRVGARAIVPFHYSPRYARRSAELIAEARAAWSGWPV
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSLFEPRLVNDPFGDPALYVEFRDERRSLLFDLGNLSVLPPRKLLRLSHVFVTHAHMDH
CCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FSGFDHLLRVVLGRKASLVLFGGPDFVAQVEHKLLAYTWNIVHRYEVELVIDVCEVGVDR
HCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEHHHHHEEHHHCCCCC
RGQWSRFSSRRGFAREAGASFELPDDVLHEEALFRVRGRFVDHAIPCLAYVIEEKAQLRV
CCCHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATDRLAALGVTTGPWLRELKHAVLTGAPDDTPIQVQWRDRQGEHAMERQLAELRHLVLDV
HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
VPGRRIGYVTDLRYTDANIETLAQLLADVDLLFIESVFLEEDQAHAARKNHLTARQAGDI
CCCCCEEEEEECEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
ARRVGARAIVPFHYSPRYARRSAELIAEARAAWSGWPV
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]