| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is fliY [H]
Identifier: 91787286
GI number: 91787286
Start: 1427431
End: 1428297
Strand: Reverse
Name: fliY [H]
Synonym: Bpro_1391
Alternate gene names: 91787286
Gene position: 1428297-1427431 (Counterclockwise)
Preceding gene: 91787293
Following gene: 91787285
Centisome position: 27.47
GC content: 58.48
Gene sequence:
>867_bases ATGAAGAAAACATTCATTGCACGCATTTTGTGCGCGCTTCTAGCAACGGGGGTCATGCTGCCGGCCGCCAACGCCCAGGC ATTGCAAACCGTCGAAAAAGACGCCTTGACGATCGCGTTCACCGGGGATATGCCAGGGACTGGCTACCAGGACGGCGCCA TGATCGGCTACGACGGTGAAATCCTTCAGCGCGTGGCGGAGGCAGTCAAGCTCAAGGTCAAGCCCGCGCTCATGGAGTGG TCGGGCACCATTGCTTCGGTGCAGGCCAAACGTGTCGACGTGATGGCCGGGACCATGGGCTGGACGGAGCAACGCTCCAA GATCATGACCTTGAGCGACCCGATCCATTACTTCAAAAACGGCATCACCCAGTCGAGCAAGACCAACTGGTCGCACCTCA AGGACCTGGAAGGCAAGAAGGTCGGCACGATCACCGGTTTCTCCTTCATCCCCGAGCTTCGGAAAATCACCGGCCTGCAA CTGACGATGTATGACACATCCGACGCGGCAGTCCGTGATCTGCTTGCCGGCCGCATCGATGCCGTCATCGGCGATCCGCC TGTCATGCAATACGCCATTTCGCGCAACCCGCAGTGGAAGCTCAAGTTCAACGCCTTTGTTGACAACAATCCGGACTACC CCCTCCTCACCGGGCTCGGCCAGGTGGTATTTGGCCTGAACAAGGACAACCCGGAACTCGCCAAGGCAGTAAACGCTGAA ATCGCCAGGCTCTGGCAGAACTGCGACCTGAAGAAGATTGGCGGCAAGTATGGCTTGGTGCAGGACGTCTGGTACGTACC TGTGGGACAGAACTTCCGTGCCAGCGTAGACCGTCCCGCCGACTGGAAATTGCCGGCCTGCAAGTAA
Upstream 100 bases:
>100_bases CGTTCAATTTACATGCCAAAGCCTCCTATGACAAGTTGATGACGCTTCATACCATCCACCCGTCAGTTTGAGATTCGTCA ACCACCACCAGGAGTTCTTC
Downstream 100 bases:
>100_bases TCCCATCGAAGCATGGATACAGGCGGGCGCTTGCGCGTTTGCCTGTTTCAAACAATTAAATCAAATGAACAACACACTGT TAAGAGTCGATGGGCTTAAG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: CBP; Protein fliY; Sulfate starvation-induced protein 7; SSI7 [H]
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MKKTFIARILCALLATGVMLPAANAQALQTVEKDALTIAFTGDMPGTGYQDGAMIGYDGEILQRVAEAVKLKVKPALMEW SGTIASVQAKRVDVMAGTMGWTEQRSKIMTLSDPIHYFKNGITQSSKTNWSHLKDLEGKKVGTITGFSFIPELRKITGLQ LTMYDTSDAAVRDLLAGRIDAVIGDPPVMQYAISRNPQWKLKFNAFVDNNPDYPLLTGLGQVVFGLNKDNPELAKAVNAE IARLWQNCDLKKIGGKYGLVQDVWYVPVGQNFRASVDRPADWKLPACK
Sequences:
>Translated_288_residues MKKTFIARILCALLATGVMLPAANAQALQTVEKDALTIAFTGDMPGTGYQDGAMIGYDGEILQRVAEAVKLKVKPALMEW SGTIASVQAKRVDVMAGTMGWTEQRSKIMTLSDPIHYFKNGITQSSKTNWSHLKDLEGKKVGTITGFSFIPELRKITGLQ LTMYDTSDAAVRDLLAGRIDAVIGDPPVMQYAISRNPQWKLKFNAFVDNNPDYPLLTGLGQVVFGLNKDNPELAKAVNAE IARLWQNCDLKKIGGKYGLVQDVWYVPVGQNFRASVDRPADWKLPACK >Mature_288_residues MKKTFIARILCALLATGVMLPAANAQALQTVEKDALTIAFTGDMPGTGYQDGAMIGYDGEILQRVAEAVKLKVKPALMEW SGTIASVQAKRVDVMAGTMGWTEQRSKIMTLSDPIHYFKNGITQSSKTNWSHLKDLEGKKVGTITGFSFIPELRKITGLQ LTMYDTSDAAVRDLLAGRIDAVIGDPPVMQYAISRNPQWKLKFNAFVDNNPDYPLLTGLGQVVFGLNKDNPELAKAVNAE IARLWQNCDLKKIGGKYGLVQDVWYVPVGQNFRASVDRPADWKLPACK
Specific function: Part of a binding-protein-dependent transport system for cystine [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=265, Percent_Identity=26.7924528301887, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787085, Length=222, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788649, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788648, Length=212, Percent_Identity=23.5849056603774, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787031, Length=187, Percent_Identity=27.2727272727273, Blast_Score=61, Evalue=9e-11,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 31654; Mature: 31654
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTFIARILCALLATGVMLPAANAQALQTVEKDALTIAFTGDMPGTGYQDGAMIGYDGE CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCHH ILQRVAEAVKLKVKPALMEWSGTIASVQAKRVDVMAGTMGWTEQRSKIMTLSDPIHYFKN HHHHHHHHHEEECCHHHHHCCCCHHHHHHHHEEEEECCCCCHHHHCEEEEECHHHHHHHH GITQSSKTNWSHLKDLEGKKVGTITGFSFIPELRKITGLQLTMYDTSDAAVRDLLAGRID CCCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH AVIGDPPVMQYAISRNPQWKLKFNAFVDNNPDYPLLTGLGQVVFGLNKDNPELAKAVNAE HHCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH IARLWQNCDLKKIGGKYGLVQDVWYVPVGQNFRASVDRPADWKLPACK HHHHHHCCCHHHCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKTFIARILCALLATGVMLPAANAQALQTVEKDALTIAFTGDMPGTGYQDGAMIGYDGE CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCHH ILQRVAEAVKLKVKPALMEWSGTIASVQAKRVDVMAGTMGWTEQRSKIMTLSDPIHYFKN HHHHHHHHHEEECCHHHHHCCCCHHHHHHHHEEEEECCCCCHHHHCEEEEECHHHHHHHH GITQSSKTNWSHLKDLEGKKVGTITGFSFIPELRKITGLQLTMYDTSDAAVRDLLAGRID CCCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH AVIGDPPVMQYAISRNPQWKLKFNAFVDNNPDYPLLTGLGQVVFGLNKDNPELAKAVNAE HHCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH IARLWQNCDLKKIGGKYGLVQDVWYVPVGQNFRASVDRPADWKLPACK HHHHHHCCCHHHCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]