| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787211
Identifier: 91787211
GI number: 91787211
Start: 1354681
End: 1356996
Strand: Reverse
Name: 91787211
Synonym: Bpro_1315
Alternate gene names: NA
Gene position: 1356996-1354681 (Counterclockwise)
Preceding gene: 91787212
Following gene: 91787210
Centisome position: 26.09
GC content: 65.72
Gene sequence:
>2316_bases ATGAACGAAACGAACTGCGAAAATGATAGCGCAGTTGCGCCTGCCGCGCAAATGGCAGCGCGCGATGACTTAATTGCCGC CTACCTGGCCGCCGGCTTTGCGCTGGTCCCAATCCCGCACGGCCTGAAAGGCCCGCGCGCGGCGGGCTGGAACCTTCGCG AAAACGCCATCACCACAAGTGAACAAGCGCAGGCGCAGCTGAACGGGTCGTGCAACATCGGTTTGGCCCACGCCTACAGC AATCCGCCGACTTGCGCCCTTGATATCGACAACATGTCACTCGCCCGGCCTTGGTTCGCTGAGCGCGGCATTGACCTCGA CGCCCTGCTGAACGCACCCGGCGCTGTGCGTATCCACTCCGGGCGGCCGGGGCGGGCTAAGCTGCTATACCGCCTGCCGC AGCCGTTGCCGTCGTGCACCCTGCCCTGGGGCGAGCTGCGCTGCGCCAGCGGCAATGGCACGACATGGCAAGACGTCCTG CCGCCATCGACCCACCCAGACACGGGACGTCCCTATGCGTGGATCGGCGACATCGCGAACATTCAGCCGATCCCTGATGC GCCGCTCAGTGCGTGGCGCCAGCAACTGGCCGCGAAAGGCCGCAAGGAACCCCACGCAGTGCCGTGCGCGCAGCGCGACG ACTTACCACCGCGTTTCGCCGAGCTGCTGCACGCGGACCCCAAGCTGCGTACGCGCTGGGACGGCGAAACCGGAGGGCTC AACGATGCGAGCCGGTCCGGCCTCGACATGAGCCTGGCTTCGCTCATGGTGATGCGCGGCTTCAATGATCACGAGATCGC CACGGCATTGCGGGCCTTCGCTCACGGGAAGGCCGCGCAGGATGGCCGGGGCGACCACGATTACACTGGGCCACTGCTGG CAAAGCTGCGTGCGCAGCGCACCCTCTCGCGCAGCGAGCCGGCCTGGACCGCCCATCGGCTCGTCGCGGAAAAATTCACC GCCGAGGACGGCGCCGCTTTGCTGCTGCACTGGCGCGGCGACTTCTACGGCTGGCGCGCGGGCGCATGGCGTTCGATGGC GCCCGCCGACCTCGAAGCGGTGATCTACGCCTATCTCGGAGGCGCGCAATATTTGGGCAAGAACGGAGCCGAGCCGTTCG GCCCGAACCGCGCACGTGTCGGCGACGTGATGGCCGCGCTGCGTGCCACGGCACACCTGGCGAGCCATCACGCGCCGCCG TGCTGGCTCAATGAGCGCGAGGGCGACCCCGATGCGCGCGACCTGCTGGTGATGGCAAACGGCATCATGCACCTGCCGAG CCGCACCCTGCGGCCACATGACGCGCAGCTGTTCACAACCACGGGATTGCCGTTCGCTTACGACGCGAATGCCGAACCGC CGATGGCCTGGCTGCGGTTCCTGCGCGAGCTGTGGCCGGATGACGCCGAGTCCCGCGAAACACTGCAGGAGTTCTTCGGC TATCTGCTGACCGCCGACAGCTCGCGTCAGAAAATTTTGATGGTGGTCGGACCGAAGCGCGCAGGCAAGGGGACGGCTAT AAAGGTGATGCGCGCGCTGCTCGGCGAGGCCAATTGCGTCGGCCCTACGCTCGACTCGCTGCGCACCAATTTCGGCCTGC AGCCTTTGATCGAAAAACGGCTCGCGGTTATCTCGGACGCGCGCCTGAGCGGCAGGGTCGACCAGCAGGCCCTGGCCGAG AGGCTTTTAGCAGTATCGGGCGAGGACACGTTGACGGTCGATCGGAAACACATCAGCGCCTGGACGGGCCGGCTCGGCGT GCGCTTTGTGCTGCTCACGAACGAGTTACCCCGCATCGCCGACAGCAGCGGCGCTTTGGCGTCTCGGTTCATCGTATTGC GGCTCACGCGGTCATGGCTGGGCTCCGAGGACTTGGGCCTGGCGGATCGGCTTCTGCGCGAGCTGCCTGCAATTTTGAAT TGGTCGTTAAACGGTCTGGAACGACTGTGCCAACGGGGGCAATTTCGCCAACCCGCTGCGGCGTCGGAACTGGTCCGCGA GCTGGAAGACTTGGGTTCGCCAGTCGGCGCATTTTTGCGGGAATCCTGTGTCGTGACACCCGGCGCCGAGGTCGAACGTG GCCGGCTTTTTCAGGCGTGGCGTCTCTGGTGCCAAGCCCACGGCTGGGAGCACCACGGCACTGAAGCAACGTTCGGCCGC GACCTGCGTGCGGCGCTGCCGGATCTACAAACGCACCACCCGCGTGTAGAGGGCCGGCAGCGCCGTTTTTACAGGGGCGT TGGACTCGCTGACAGCTGGCAGGGAAATGGCGAAATGGGATTTTTTAATCGTTTGCGCCCCGCTGCGGGAGGGTGA
Upstream 100 bases:
>100_bases GTCAGGCGCGAAGGCATCGCGTGGCCGAAGGACGACGAATAAGTCAAAGAAAAGCCCCTTGCACCCTGAGGGTGGCGCAA GAGGGCCGGGAGAGCTCGTC
Downstream 100 bases:
>100_bases TGCAGGCTGATGCATGCATCTAACCATTGCAGGTTCACATTCAAATAAAGATAAATATATATACAGATTGCAATGGAGAA ATGCATGCATCAGCCTGCAT
Product: Phage/plasmid primase P4-like protein
Products: NA
Alternate protein names: P4 Family Phage/Plasmid Primase; Primase; Phage/Plasmid Primase; DNA Primase/Helicase; Phage Primase; Phage/Plasmid Primase P4-Like; DNA Primase; Phage/Plasmid Primase P4 C-Terminal Protein; Phage-Like Protein; Plasmid/Phage Primase; Bacteriophage Protein; Nucleoside Triphosphatase D5 Family; Phage Associated DNA Primase; Phage/Plasmid Primase P4-Like Protein
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MNETNCENDSAVAPAAQMAARDDLIAAYLAAGFALVPIPHGLKGPRAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYS NPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGELRCASGNGTTWQDVL PPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAAKGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGL NDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQRTLSRSEPAWTAHRLVAEKFT AEDGAALLLHWRGDFYGWRAGAWRSMAPADLEAVIYAYLGGAQYLGKNGAEPFGPNRARVGDVMAALRATAHLASHHAPP CWLNEREGDPDARDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFLRELWPDDAESRETLQEFFG YLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVGPTLDSLRTNFGLQPLIEKRLAVISDARLSGRVDQQALAE RLLAVSGEDTLTVDRKHISAWTGRLGVRFVLLTNELPRIADSSGALASRFIVLRLTRSWLGSEDLGLADRLLRELPAILN WSLNGLERLCQRGQFRQPAAASELVRELEDLGSPVGAFLRESCVVTPGAEVERGRLFQAWRLWCQAHGWEHHGTEATFGR DLRAALPDLQTHHPRVEGRQRRFYRGVGLADSWQGNGEMGFFNRLRPAAGG
Sequences:
>Translated_771_residues MNETNCENDSAVAPAAQMAARDDLIAAYLAAGFALVPIPHGLKGPRAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYS NPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGELRCASGNGTTWQDVL PPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAAKGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGL NDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQRTLSRSEPAWTAHRLVAEKFT AEDGAALLLHWRGDFYGWRAGAWRSMAPADLEAVIYAYLGGAQYLGKNGAEPFGPNRARVGDVMAALRATAHLASHHAPP CWLNEREGDPDARDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFLRELWPDDAESRETLQEFFG YLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVGPTLDSLRTNFGLQPLIEKRLAVISDARLSGRVDQQALAE RLLAVSGEDTLTVDRKHISAWTGRLGVRFVLLTNELPRIADSSGALASRFIVLRLTRSWLGSEDLGLADRLLRELPAILN WSLNGLERLCQRGQFRQPAAASELVRELEDLGSPVGAFLRESCVVTPGAEVERGRLFQAWRLWCQAHGWEHHGTEATFGR DLRAALPDLQTHHPRVEGRQRRFYRGVGLADSWQGNGEMGFFNRLRPAAGG >Mature_771_residues MNETNCENDSAVAPAAQMAARDDLIAAYLAAGFALVPIPHGLKGPRAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYS NPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGELRCASGNGTTWQDVL PPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAAKGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGL NDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQRTLSRSEPAWTAHRLVAEKFT AEDGAALLLHWRGDFYGWRAGAWRSMAPADLEAVIYAYLGGAQYLGKNGAEPFGPNRARVGDVMAALRATAHLASHHAPP CWLNEREGDPDARDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFLRELWPDDAESRETLQEFFG YLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVGPTLDSLRTNFGLQPLIEKRLAVISDARLSGRVDQQALAE RLLAVSGEDTLTVDRKHISAWTGRLGVRFVLLTNELPRIADSSGALASRFIVLRLTRSWLGSEDLGLADRLLRELPAILN WSLNGLERLCQRGQFRQPAAASELVRELEDLGSPVGAFLRESCVVTPGAEVERGRLFQAWRLWCQAHGWEHHGTEATFGR DLRAALPDLQTHHPRVEGRQRRFYRGVGLADSWQGNGEMGFFNRLRPAAGG
Specific function: Unknown
COG id: COG3378
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84485; Mature: 84485
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETNCENDSAVAPAAQMAARDDLIAAYLAAGFALVPIPHGLKGPRAAGWNLRENAITTS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCC EQAQAQLNGSCNIGLAHAYSNPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHS HHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHCCCCEEEEEC GRPGRAKLLYRLPQPLPSCTLPWGELRCASGNGTTWQDVLPPSTHPDTGRPYAWIGDIAN CCCCHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCHHCCCCCCCCCCCCCCCEEECCCCC IQPIPDAPLSAWRQQLAAKGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGL CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC NDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQR CCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH TLSRSEPAWTAHRLVAEKFTAEDGAALLLHWRGDFYGWRAGAWRSMAPADLEAVIYAYLG HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHC GAQYLGKNGAEPFGPNRARVGDVMAALRATAHLASHHAPPCWLNEREGDPDARDLLVMAN CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHC GIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFLRELWPDDAESRETLQEFFG CHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH YLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVGPTLDSLRTNFGLQPLIEKR HHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHH LAVISDARLSGRVDQQALAERLLAVSGEDTLTVDRKHISAWTGRLGVRFVLLTNELPRIA HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCCEEEEEEECCCCCCC DSSGALASRFIVLRLTRSWLGSEDLGLADRLLRELPAILNWSLNGLERLCQRGQFRQPAA CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ASELVRELEDLGSPVGAFLRESCVVTPGAEVERGRLFQAWRLWCQAHGWEHHGTEATFGR HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC DLRAALPDLQTHHPRVEGRQRRFYRGVGLADSWQGNGEMGFFNRLRPAAGG HHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure MNETNCENDSAVAPAAQMAARDDLIAAYLAAGFALVPIPHGLKGPRAAGWNLRENAITTS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCC EQAQAQLNGSCNIGLAHAYSNPPTCALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHS HHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHCCCCEEEEEC GRPGRAKLLYRLPQPLPSCTLPWGELRCASGNGTTWQDVLPPSTHPDTGRPYAWIGDIAN CCCCHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCHHCCCCCCCCCCCCCCCEEECCCCC IQPIPDAPLSAWRQQLAAKGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGL CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC NDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQR CCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH TLSRSEPAWTAHRLVAEKFTAEDGAALLLHWRGDFYGWRAGAWRSMAPADLEAVIYAYLG HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHC GAQYLGKNGAEPFGPNRARVGDVMAALRATAHLASHHAPPCWLNEREGDPDARDLLVMAN CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHC GIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFLRELWPDDAESRETLQEFFG CHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH YLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVGPTLDSLRTNFGLQPLIEKR HHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHH LAVISDARLSGRVDQQALAERLLAVSGEDTLTVDRKHISAWTGRLGVRFVLLTNELPRIA HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCCEEEEEEECCCCCCC DSSGALASRFIVLRLTRSWLGSEDLGLADRLLRELPAILNWSLNGLERLCQRGQFRQPAA CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ASELVRELEDLGSPVGAFLRESCVVTPGAEVERGRLFQAWRLWCQAHGWEHHGTEATFGR HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC DLRAALPDLQTHHPRVEGRQRRFYRGVGLADSWQGNGEMGFFNRLRPAAGG HHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA