| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is aroE [H]
Identifier: 91786985
GI number: 91786985
Start: 1119407
End: 1120267
Strand: Reverse
Name: aroE [H]
Synonym: Bpro_1087
Alternate gene names: 91786985
Gene position: 1120267-1119407 (Counterclockwise)
Preceding gene: 91786986
Following gene: 91786984
Centisome position: 21.54
GC content: 65.51
Gene sequence:
>861_bases ATGGATAAGTATTTCGTCCTCGGCAACCCGATTCAACACAGCAAATCGCCGCAGATTCATGCACGCTTTGCCGAACTGAC AGGCCAGACGCTGGAATACGACCGGCTGCTCACGCCGCTCGACGGCTTTGCCGCGACGCTCGCGCAACTGGTGCAGAGCG GCGCGCGCGGCTGCAACGTCACGGTTCCGTTCAAATTCGAGGCCTTTCAGGCAGCCGGCACTCAGAGCGACCGGGCGCAG CTGGCCCAGGCCGCCAACACCCTGAAGCTGGACGGCAACACCATTTACGCCGACAACACCGATGGCATAGGGCTCGTCAA CGATATCCAGAACAACGCCGGTGTTTCACTGGCCGGTCGCGACGTCCTGCTCATAGGCGCCGGCGGCGCGGGTGCCGGCG CGCTGGCACCGCTGCTGGCAGCCGGACCGCGCAGGCTGGTGCTGGCCAACCGCACCCGGGCCAAGGCCGATGCACTGGTG TTGCGCCACACCCTGCACCCGTCCCTGCAGGAGGCGCTACAAAAAACAGAGCTATCAGCCCAGGATTTGCAGGGGATAGA TGGTAGTTTTGATGTCGTGATCAATGCCAGCGCGAGCAGCCTGAGCGGTGGCGGCGTGCCAGTGGACAGCCGCGTGCTCA AGCCGGGCGCGCTGGCGTACGACATGATGTATGGCCCTGCGGCGGACGGTTTCATGACCTGGGCCCGCGAACACGGCGCC ACGCCACGTGACGGCCTGGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCGCTGTGGCGCGGCGTGCGGCCGCCATC GCAGCAGGTCCTGCAGGAAATGCGGACAGCCATGCAGACGCAGCAGACGCAGGCCAGATGA
Upstream 100 bases:
>100_bases ACGCTGGAAACCCGGCTGACCAGCCGCTGAGCCTTCGCACGCCCCTTGCCGACAACGCCCCGATGCCAACCGCCTTCACT CATGCATAAGCCTTGTATCC
Downstream 100 bases:
>100_bases AAGCGCTGCTGCGCCTGCTGGGTCTGGTACTGTTGGCGGGTCTGGCCCTGCAGATTTATTTTGTGGCCCGGATCGCGCTG ATGGCCGTGGTCAAACCCGA
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MDKYFVLGNPIQHSKSPQIHARFAELTGQTLEYDRLLTPLDGFAATLAQLVQSGARGCNVTVPFKFEAFQAAGTQSDRAQ LAQAANTLKLDGNTIYADNTDGIGLVNDIQNNAGVSLAGRDVLLIGAGGAGAGALAPLLAAGPRRLVLANRTRAKADALV LRHTLHPSLQEALQKTELSAQDLQGIDGSFDVVINASASSLSGGGVPVDSRVLKPGALAYDMMYGPAADGFMTWAREHGA TPRDGLGMLVEQAAEAFALWRGVRPPSQQVLQEMRTAMQTQQTQAR
Sequences:
>Translated_286_residues MDKYFVLGNPIQHSKSPQIHARFAELTGQTLEYDRLLTPLDGFAATLAQLVQSGARGCNVTVPFKFEAFQAAGTQSDRAQ LAQAANTLKLDGNTIYADNTDGIGLVNDIQNNAGVSLAGRDVLLIGAGGAGAGALAPLLAAGPRRLVLANRTRAKADALV LRHTLHPSLQEALQKTELSAQDLQGIDGSFDVVINASASSLSGGGVPVDSRVLKPGALAYDMMYGPAADGFMTWAREHGA TPRDGLGMLVEQAAEAFALWRGVRPPSQQVLQEMRTAMQTQQTQAR >Mature_286_residues MDKYFVLGNPIQHSKSPQIHARFAELTGQTLEYDRLLTPLDGFAATLAQLVQSGARGCNVTVPFKFEAFQAAGTQSDRAQ LAQAANTLKLDGNTIYADNTDGIGLVNDIQNNAGVSLAGRDVLLIGAGGAGAGALAPLLAAGPRRLVLANRTRAKADALV LRHTLHPSLQEALQKTELSAQDLQGIDGSFDVVINASASSLSGGGVPVDSRVLKPGALAYDMMYGPAADGFMTWAREHGA TPRDGLGMLVEQAAEAFALWRGVRPPSQQVLQEMRTAMQTQQTQAR
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789675, Length=280, Percent_Identity=40.3571428571429, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1787983, Length=280, Percent_Identity=28.9285714285714, Blast_Score=94, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6320332, Length=296, Percent_Identity=28.0405405405405, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 30219; Mature: 30219
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKYFVLGNPIQHSKSPQIHARFAELTGQTLEYDRLLTPLDGFAATLAQLVQSGARGCNV CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCEE TVPFKFEAFQAAGTQSDRAQLAQAANTLKLDGNTIYADNTDGIGLVNDIQNNAGVSLAGR EEEEEEHHHHHCCCCHHHHHHHHHHCEEEECCCEEEECCCCCCCCHHHCCCCCCCEEECC DVLLIGAGGAGAGALAPLLAAGPRRLVLANRTRAKADALVLRHTLHPSLQEALQKTELSA CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCH QDLQGIDGSFDVVINASASSLSGGGVPVDSRVLKPGALAYDMMYGPAADGFMTWAREHGA HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCHHHHHHHHCCC TPRDGLGMLVEQAAEAFALWRGVRPPSQQVLQEMRTAMQTQQTQAR CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKYFVLGNPIQHSKSPQIHARFAELTGQTLEYDRLLTPLDGFAATLAQLVQSGARGCNV CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCEE TVPFKFEAFQAAGTQSDRAQLAQAANTLKLDGNTIYADNTDGIGLVNDIQNNAGVSLAGR EEEEEEHHHHHCCCCHHHHHHHHHHCEEEECCCEEEECCCCCCCCHHHCCCCCCCEEECC DVLLIGAGGAGAGALAPLLAAGPRRLVLANRTRAKADALVLRHTLHPSLQEALQKTELSA CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCH QDLQGIDGSFDVVINASASSLSGGGVPVDSRVLKPGALAYDMMYGPAADGFMTWAREHGA HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCHHHHHHHHCCC TPRDGLGMLVEQAAEAFALWRGVRPPSQQVLQEMRTAMQTQQTQAR CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA