| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786863
Identifier: 91786863
GI number: 91786863
Start: 983095
End: 984222
Strand: Reverse
Name: 91786863
Synonym: Bpro_0961
Alternate gene names: NA
Gene position: 984222-983095 (Counterclockwise)
Preceding gene: 91786864
Following gene: 91786862
Centisome position: 18.93
GC content: 60.9
Gene sequence:
>1128_bases GTGAGCGGCTTGGGGGAAGTGTTTGAAGGGCTGGAGGTGCCGCCCAGCGTGCCGTTCCATCCGAAAAAGCAAGCCTCACC AGCGCCTGAGCCGGCACCTGATCGCGCCCCGCGGTTCCAGCTTCTCAGCGTGGCCGAACTTCACAGATTGCCGCGATTGA CTTGGGCCATTCACGGTGTGCTACCGGCGACTGGTTGCGCCGCCATCTACGGTCCCAGCGGGTCCGGGAAAAGTTTTCTT GAGCTCGACTTGGTAGCGGCGCTGACCGAGATGGGCGATTGGTTCGGGCACAAGGTTCGCGTGCCGTTGCGTGTCGTGAT TATTGTCCTCGAAGGGGAAGCAGGATTTCGCAATCGAGTCGAAGCGTGGGAGATTGTTCACAACAGGCCATTTCCAGAGC AGGTGCAGTTCGTGTTCCAGCCCTTCAGGCTCAATGATCGCGCCGACTGTCTGGCCCTTGCTGCGGCGATTGATCACGCT GGCGGGACCGATGTCGTAGTGGTTGACACCCTCAACCGCGCCGCGCCAGGCACCGATGAGAACAGTAGCCGCGACATGGG GATCATTCTGGACCACTGCAACGAACTGCAGCGCATGTTCGGGGGCTTGCTGCTGTTGGTGCACCACACCGGTAAAGATG CCGCCAAGGGTATGCGCGGCCATTCAAGTCTGCACGCTGCGCTGGACGCGGCCATTGAGGTCACACGGACTGATGATCGC AGGGAATGGACCTTAGCAAAGTCCAAGGACGGCGCCGACGGCCAACCTCACGGCTTTTTCCTCGAAGTCGTTCACTTGGA CGATGACGATGATGGTGAGCCTGTGACTTCCTGCGCTGTGCGTTCGGATGACACCCCTGTAGTGCACCGCCCGCGGCTGC CGAAGGGCGGCAATCAGCGAATCATCTACGACGCCTTGAACCCGCTTTTCAGGGACTCACGGCACTTCGGCATGGCCGGT GCACCGCCTACCCGCCCTTGCATTCGCCTGGACGACGCAATCGCGGCCACCAAGGACAGCCTAGCGGTTGAGGCAAAGCG CCGGCCAGAACGCACCCGCCTAGCCATAACCGGGTTGATCGCTACGCATGTCCTGGATTGCAAAGAGGACTGGATATGGC TTCGCTGA
Upstream 100 bases:
>100_bases CGCTCGGCAACAAGTGGCCAGAACACCGCGAGTGGGTAGAGGCTTATCTCCGGCAGGAAATCCGGGAACGTCTGATCGCG CGCGGCTGGAGGCCTAAGCG
Downstream 100 bases:
>100_bases GGTTTCCCATTCTTCCCATTTCTTCCCAATCTGGTGCCGATGGGATTCCCATTCTTCCCACTCTCCCTTTAGGGGAGTGG GAAATGGGAACGGGCGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Helicase; ATPase-Like Protein; Regulatory Prophage Protein; TOPRIM Domain Protein; DNA Primase
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MSGLGEVFEGLEVPPSVPFHPKKQASPAPEPAPDRAPRFQLLSVAELHRLPRLTWAIHGVLPATGCAAIYGPSGSGKSFL ELDLVAALTEMGDWFGHKVRVPLRVVIIVLEGEAGFRNRVEAWEIVHNRPFPEQVQFVFQPFRLNDRADCLALAAAIDHA GGTDVVVVDTLNRAAPGTDENSSRDMGIILDHCNELQRMFGGLLLLVHHTGKDAAKGMRGHSSLHAALDAAIEVTRTDDR REWTLAKSKDGADGQPHGFFLEVVHLDDDDDGEPVTSCAVRSDDTPVVHRPRLPKGGNQRIIYDALNPLFRDSRHFGMAG APPTRPCIRLDDAIAATKDSLAVEAKRRPERTRLAITGLIATHVLDCKEDWIWLR
Sequences:
>Translated_375_residues MSGLGEVFEGLEVPPSVPFHPKKQASPAPEPAPDRAPRFQLLSVAELHRLPRLTWAIHGVLPATGCAAIYGPSGSGKSFL ELDLVAALTEMGDWFGHKVRVPLRVVIIVLEGEAGFRNRVEAWEIVHNRPFPEQVQFVFQPFRLNDRADCLALAAAIDHA GGTDVVVVDTLNRAAPGTDENSSRDMGIILDHCNELQRMFGGLLLLVHHTGKDAAKGMRGHSSLHAALDAAIEVTRTDDR REWTLAKSKDGADGQPHGFFLEVVHLDDDDDGEPVTSCAVRSDDTPVVHRPRLPKGGNQRIIYDALNPLFRDSRHFGMAG APPTRPCIRLDDAIAATKDSLAVEAKRRPERTRLAITGLIATHVLDCKEDWIWLR >Mature_374_residues SGLGEVFEGLEVPPSVPFHPKKQASPAPEPAPDRAPRFQLLSVAELHRLPRLTWAIHGVLPATGCAAIYGPSGSGKSFLE LDLVAALTEMGDWFGHKVRVPLRVVIIVLEGEAGFRNRVEAWEIVHNRPFPEQVQFVFQPFRLNDRADCLALAAAIDHAG GTDVVVVDTLNRAAPGTDENSSRDMGIILDHCNELQRMFGGLLLLVHHTGKDAAKGMRGHSSLHAALDAAIEVTRTDDRR EWTLAKSKDGADGQPHGFFLEVVHLDDDDDGEPVTSCAVRSDDTPVVHRPRLPKGGNQRIIYDALNPLFRDSRHFGMAGA PPTRPCIRLDDAIAATKDSLAVEAKRRPERTRLAITGLIATHVLDCKEDWIWLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41141; Mature: 41010
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLGEVFEGLEVPPSVPFHPKKQASPAPEPAPDRAPRFQLLSVAELHRLPRLTWAIHGV CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC LPATGCAAIYGPSGSGKSFLELDLVAALTEMGDWFGHKVRVPLRVVIIVLEGEAGFRNRV CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCHHH EAWEIVHNRPFPEQVQFVFQPFRLNDRADCLALAAAIDHAGGTDVVVVDTLNRAAPGTDE HHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC NSSRDMGIILDHCNELQRMFGGLLLLVHHTGKDAAKGMRGHSSLHAALDAAIEVTRTDDR CCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCHHHHHHHHHHEEEEECCCC REWTLAKSKDGADGQPHGFFLEVVHLDDDDDGEPVTSCAVRSDDTPVVHRPRLPKGGNQR CEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCHHHEEECCCCCCCEECCCCCCCCCCE IIYDALNPLFRDSRHFGMAGAPPTRPCIRLDDAIAATKDSLAVEAKRRPERTRLAITGLI EEHHHHCHHHHCCCCCCCCCCCCCCCCEEECHHHHHCCHHHEEEHHCCCCHHHHHHHHHH ATHVLDCKEDWIWLR HHHHHHCCCCCEECC >Mature Secondary Structure SGLGEVFEGLEVPPSVPFHPKKQASPAPEPAPDRAPRFQLLSVAELHRLPRLTWAIHGV CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC LPATGCAAIYGPSGSGKSFLELDLVAALTEMGDWFGHKVRVPLRVVIIVLEGEAGFRNRV CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCHHH EAWEIVHNRPFPEQVQFVFQPFRLNDRADCLALAAAIDHAGGTDVVVVDTLNRAAPGTDE HHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC NSSRDMGIILDHCNELQRMFGGLLLLVHHTGKDAAKGMRGHSSLHAALDAAIEVTRTDDR CCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCHHHHHHHHHHEEEEECCCC REWTLAKSKDGADGQPHGFFLEVVHLDDDDDGEPVTSCAVRSDDTPVVHRPRLPKGGNQR CEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCHHHEEECCCCCCCEECCCCCCCCCCE IIYDALNPLFRDSRHFGMAGAPPTRPCIRLDDAIAATKDSLAVEAKRRPERTRLAITGLI EEHHHHCHHHHCCCCCCCCCCCCCCCCEEECHHHHHCCHHHEEEHHCCCCHHHHHHHHHH ATHVLDCKEDWIWLR HHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA