Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 91786850

GI number: 91786850

Start: 969681

End: 970415

Strand: Reverse

Name: radC [C]

Synonym: Bpro_0948

Alternate gene names: 91786850

Gene position: 970415-969681 (Counterclockwise)

Preceding gene: 91786851

Following gene: 91786849

Centisome position: 18.66

GC content: 67.76

Gene sequence:

>735_bases
ATGTCCGGGAGAAAAGCCGGATTTGCCCCGCTCCCCCTCCCTGATCGGACCCCTTCCCCCATGCTGCTGAAAGACCTGCC
CGAGGACGCCCGCCCCCGAGAAAAACTGCTGGCCCGCGGCCCCGCCGCCCTCAGCGATGCCGAACTGCTGGCGCTGCTGC
TGCGCACCGGCCTGCCCGGCAAGAATGCGCTGCAGATGGGCCAGGAACTGGTGGACACCTTCGGCGGCGTGGCCGGGCTG
CTGCATACCGGGCCCGAAGCGCTCAAAAGCATCAAGGGCCTGGGCCCGGCCAAACGGGCCGAGCTGGTTGCGGTGCTGGA
GCTGGCCCGCCGCGCGCTGGCCGAAGAACTGAAGGAAAAGGCGCTGTTTTCCACGCCGCAGGCCGTGCGTGACTATTTGC
AGCTGCAGCTGGGCGGCCGGCCGCACGAGATCTTTGCCGTGCTGTTCCTGGACAGCCAGCACCGGCTGATTGCGCTGGAA
GAGCTGTTTCGCGGCACGCTGACGCAGACCAGCGTCTACCCGCGCGAAGTCGTGGTGCGGGCACTGGCGCTGAACGCCGC
CAGCGTGGTGCTGGCACACAACCACCCGAGCGGCGCCGCCACGCCCTCCCGCGCCGACGAGGCATTGACGCAAACCCTCA
AGTCCGCGCTGGCGCTGGTGGATGTGCGCGTGCTCGACCATTTTGTGGTGACAAGTACCCAGGCGGTGTCGATGGCCGAG
CTGGGACTGCTATAA

Upstream 100 bases:

>100_bases
GGGGTCGTGTCTGAGCCGTGTGCGGTGAAAGTCGCAAGCACGGTTCGTCGGGGGGGATATCATCAAAAGATGGTATCCCT
ACCCTCCTAGAAAGTAAGCC

Downstream 100 bases:

>100_bases
AGTCCGGCTCATGAAAGCGCTCGCCATCAAAAGTCTCAAAGACCTGAAGGCCGTGAGACAGGAAATTGAAACCCGCGCCC
GGCTGGCGGCAGATGCAGAG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSGRKAGFAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMGQELVDTFGGVAGL
LHTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEKALFSTPQAVRDYLQLQLGGRPHEIFAVLFLDSQHRLIALE
ELFRGTLTQTSVYPREVVVRALALNAASVVLAHNHPSGAATPSRADEALTQTLKSALALVDVRVLDHFVVTSTQAVSMAE
LGLL

Sequences:

>Translated_244_residues
MSGRKAGFAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMGQELVDTFGGVAGL
LHTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEKALFSTPQAVRDYLQLQLGGRPHEIFAVLFLDSQHRLIALE
ELFRGTLTQTSVYPREVVVRALALNAASVVLAHNHPSGAATPSRADEALTQTLKSALALVDVRVLDHFVVTSTQAVSMAE
LGLL
>Mature_243_residues
SGRKAGFAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPGKNALQMGQELVDTFGGVAGLL
HTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEKALFSTPQAVRDYLQLQLGGRPHEIFAVLFLDSQHRLIALEE
LFRGTLTQTSVYPREVVVRALALNAASVVLAHNHPSGAATPSRADEALTQTLKSALALVDVRVLDHFVVTSTQAVSMAEL
GLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=45.5399061032864, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI2367100, Length=141, Percent_Identity=52.4822695035461, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788997, Length=133, Percent_Identity=52.6315789473684, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788312, Length=142, Percent_Identity=49.2957746478873, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26088; Mature: 25957

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRKAGFAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPG
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
KNALQMGQELVDTFGGVAGLLHTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALFSTPQAVRDYLQLQLGGRPHEIFAVLFLDSQHRLIALEELFRGTLTQTSVYPREVVVR
HHCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
ALALNAASVVLAHNHPSGAATPSRADEALTQTLKSALALVDVRVLDHFVVTSTQAVSMAE
HHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LGLL
HCCC
>Mature Secondary Structure 
SGRKAGFAPLPLPDRTPSPMLLKDLPEDARPREKLLARGPAALSDAELLALLLRTGLPG
CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
KNALQMGQELVDTFGGVAGLLHTGPEALKSIKGLGPAKRAELVAVLELARRALAEELKEK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALFSTPQAVRDYLQLQLGGRPHEIFAVLFLDSQHRLIALEELFRGTLTQTSVYPREVVVR
HHCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
ALALNAASVVLAHNHPSGAATPSRADEALTQTLKSALALVDVRVLDHFVVTSTQAVSMAE
HHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LGLL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA