| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is nadB1 [H]
Identifier: 91786807
GI number: 91786807
Start: 923849
End: 925474
Strand: Reverse
Name: nadB1 [H]
Synonym: Bpro_0905
Alternate gene names: 91786807
Gene position: 925474-923849 (Counterclockwise)
Preceding gene: 91786808
Following gene: 91786803
Centisome position: 17.8
GC content: 66.73
Gene sequence:
>1626_bases ATGACTGATTCAACTGCCCCCGTGCAACATGTGTTTGATGTGCTGGTGGTCGGCAGCGGCCTGGCCGGCCTGACGGCGGC GCTGCAGCTGGCCCCCACCCACCGCGTGGCCGTGCTGACCAAGCGCGCCATGAACGACGGCTCCAGCGGCTGGGCCCAGG GCGGCATTGCCGCCGTGATGGCCGAAGACGACAGCTTTGACTCGCACGTGGACGACACCCTGGTGGCGGGCGCAGGCCTG TCGGATCCGGCCGCCACCCGCTTTGTGGTGGAAAACGCGCCGAAAACCATTGCCTGGCTGCAGGAGATGGGCGTGCCGTT CTCGCAGGAAGACGGCCAGAACGGTCGCTTGCACCTGACGCGCGAGGGCGGCCACAGCGCCCGACGCATCGTGCATGTGA CGGACGCCACCGGCGCCGCCGTGCAGCGCACGCTGATCGGGCAGGTACGCCGCACGCCCAACATCACGCTGTTCGAGAAC CACACGCTGGTCGACCTGATCACCGCCCGCAAGCTGGGCCACACCTCGGCGGCTGAACCCGATCGCTGCCTCGGCCTGTA TGCGCTGGACGAAGCCACCGACAAGGTACTCACCTTCAGCGCGCCGCACACCATCCTGGCCACTGGGGGCGCGGGCAAGG TCTACCTGTACACCACCAACCCCGACACCGCCACCGGTGACGGCGTGGCGGCGGCCTGGCGCGCCGGTTGCCGCGCGGCC AACATGGAATTCATCCAGTTCCACCCCACCTGCCTGTACCACCCGCATGCCAAATCGTTTTTGATCAGCGAGGCGGTGCG TGGCGAAGGCGGGCGCCTGCTGCTGCCCGAATCGGCAGGGGGCACTCGCTTCATGCCCCTGCATGATGAGCGCGCCGAAC TGGCGCCGCGCGATGTGGTGGCGCGCGCAATCGACTTCGAGATGAAAAAGCACGGCCTTGACTGCGTGCACCTGGACATT TCACACCAGCCGCTGGCTTTTATCCTGGCCCATTTCCCCAATATCTACGCCCGCTGCCTTGAATTTGGCATCGACATTTC GAAGCAGCCGATTCCCGTGGTGCCGGCAGCGCACTACACCTGCGGCGGCGTGCTGACCGACCTGGACGGCCGCACCGACC TGCCCGGCCTGTATGCGATTGGCGAGACGGCCTGCACCGGCCTGCACGGCGCCAACCGGCTGGCCAGCAATTCGCTGGTG GAATGCATGGTGTTTGCGCGCGCTGCGGCACAGGACATCGTTCGAACGCCGCGCCCCCGGGCGCCAGTACTTCCCGAATG GGACGACAGCCGCGTCACCGACGCCGACGAGGCCGTGGTGATTTCGCACAACTGGGATGAACTGCGCCGCTTCATGTGGG ACTACGTGGGCATCGTGCGGACCAACAAGCGCCTGGAGCGCGCCGCCCACCGCATCACGCTGCTGCAGGGCGAAATCCAG GAGTACTACGCGCATTTCCATGTCACGCGCGATTTGCTGGAACTTCGCAACCTGGTGCAGGCGGCCGAACTGATTGTTCG TTCGGCCCAGGCCCGGCATGAAAGCCGCGGCCTGCATTTCAGCCGCGATTACCCGGCCATGGCGGCCACGGCGACCCCGA CCATCCTCGTGCCGCCAGCGGCCTGA
Upstream 100 bases:
>100_bases CGAATTGTCCAAGGAAGGCCTGCTGGAAGTCACGCAGGCCGAAGCTTTTGCCCCGGTTTACGTGCGCCTGGCCTACACTC CCGCCTGATATTCATCCTTC
Downstream 100 bases:
>100_bases ACCGACGCGGGCATCAGGCGGTGCGGGGCTCCAGCTCCGCCGGGATCCAGCCGCGCAGGCTGTTCACAAAAGCCAGCGCC TGCACCCGCGGCAGATCCGC
Product: L-aspartate oxidase
Products: NA
Alternate protein names: LASPO 1; Quinolinate synthase B 1 [H]
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MTDSTAPVQHVFDVLVVGSGLAGLTAALQLAPTHRVAVLTKRAMNDGSSGWAQGGIAAVMAEDDSFDSHVDDTLVAGAGL SDPAATRFVVENAPKTIAWLQEMGVPFSQEDGQNGRLHLTREGGHSARRIVHVTDATGAAVQRTLIGQVRRTPNITLFEN HTLVDLITARKLGHTSAAEPDRCLGLYALDEATDKVLTFSAPHTILATGGAGKVYLYTTNPDTATGDGVAAAWRAGCRAA NMEFIQFHPTCLYHPHAKSFLISEAVRGEGGRLLLPESAGGTRFMPLHDERAELAPRDVVARAIDFEMKKHGLDCVHLDI SHQPLAFILAHFPNIYARCLEFGIDISKQPIPVVPAAHYTCGGVLTDLDGRTDLPGLYAIGETACTGLHGANRLASNSLV ECMVFARAAAQDIVRTPRPRAPVLPEWDDSRVTDADEAVVISHNWDELRRFMWDYVGIVRTNKRLERAAHRITLLQGEIQ EYYAHFHVTRDLLELRNLVQAAELIVRSAQARHESRGLHFSRDYPAMAATATPTILVPPAA
Sequences:
>Translated_541_residues MTDSTAPVQHVFDVLVVGSGLAGLTAALQLAPTHRVAVLTKRAMNDGSSGWAQGGIAAVMAEDDSFDSHVDDTLVAGAGL SDPAATRFVVENAPKTIAWLQEMGVPFSQEDGQNGRLHLTREGGHSARRIVHVTDATGAAVQRTLIGQVRRTPNITLFEN HTLVDLITARKLGHTSAAEPDRCLGLYALDEATDKVLTFSAPHTILATGGAGKVYLYTTNPDTATGDGVAAAWRAGCRAA NMEFIQFHPTCLYHPHAKSFLISEAVRGEGGRLLLPESAGGTRFMPLHDERAELAPRDVVARAIDFEMKKHGLDCVHLDI SHQPLAFILAHFPNIYARCLEFGIDISKQPIPVVPAAHYTCGGVLTDLDGRTDLPGLYAIGETACTGLHGANRLASNSLV ECMVFARAAAQDIVRTPRPRAPVLPEWDDSRVTDADEAVVISHNWDELRRFMWDYVGIVRTNKRLERAAHRITLLQGEIQ EYYAHFHVTRDLLELRNLVQAAELIVRSAQARHESRGLHFSRDYPAMAATATPTILVPPAA >Mature_540_residues TDSTAPVQHVFDVLVVGSGLAGLTAALQLAPTHRVAVLTKRAMNDGSSGWAQGGIAAVMAEDDSFDSHVDDTLVAGAGLS DPAATRFVVENAPKTIAWLQEMGVPFSQEDGQNGRLHLTREGGHSARRIVHVTDATGAAVQRTLIGQVRRTPNITLFENH TLVDLITARKLGHTSAAEPDRCLGLYALDEATDKVLTFSAPHTILATGGAGKVYLYTTNPDTATGDGVAAAWRAGCRAAN MEFIQFHPTCLYHPHAKSFLISEAVRGEGGRLLLPESAGGTRFMPLHDERAELAPRDVVARAIDFEMKKHGLDCVHLDIS HQPLAFILAHFPNIYARCLEFGIDISKQPIPVVPAAHYTCGGVLTDLDGRTDLPGLYAIGETACTGLHGANRLASNSLVE CMVFARAAAQDIVRTPRPRAPVLPEWDDSRVTDADEAVVISHNWDELRRFMWDYVGIVRTNKRLERAAHRITLLQGEIQE YYAHFHVTRDLLELRNLVQAAELIVRSAQARHESRGLHFSRDYPAMAATATPTILVPPAA
Specific function: Catalyzes the oxidation of L-aspartate to iminoaspartate [H]
COG id: COG0029
COG function: function code H; Aspartate oxidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily [H]
Homologues:
Organism=Homo sapiens, GI156416003, Length=515, Percent_Identity=33.2038834951456, Blast_Score=238, Evalue=1e-62, Organism=Escherichia coli, GI1788928, Length=535, Percent_Identity=58.5046728971963, Blast_Score=617, Evalue=1e-178, Organism=Escherichia coli, GI1790597, Length=512, Percent_Identity=32.6171875, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1786942, Length=563, Percent_Identity=31.7939609236234, Blast_Score=202, Evalue=6e-53, Organism=Caenorhabditis elegans, GI17505833, Length=533, Percent_Identity=32.0825515947467, Blast_Score=225, Evalue=4e-59, Organism=Caenorhabditis elegans, GI17550100, Length=540, Percent_Identity=31.8518518518519, Blast_Score=221, Evalue=7e-58, Organism=Caenorhabditis elegans, GI71986328, Length=476, Percent_Identity=26.6806722689076, Blast_Score=87, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322416, Length=565, Percent_Identity=33.8053097345133, Blast_Score=241, Evalue=2e-64, Organism=Saccharomyces cerevisiae, GI6322701, Length=562, Percent_Identity=32.7402135231317, Blast_Score=236, Evalue=6e-63, Organism=Saccharomyces cerevisiae, GI6322511, Length=493, Percent_Identity=26.7748478701826, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI17137288, Length=574, Percent_Identity=34.4947735191638, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI24655642, Length=574, Percent_Identity=34.4947735191638, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI24655647, Length=574, Percent_Identity=34.4947735191638, Blast_Score=239, Evalue=3e-63, Organism=Drosophila melanogaster, GI24663005, Length=572, Percent_Identity=31.6433566433566, Blast_Score=221, Evalue=8e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR015939 - InterPro: IPR004112 - InterPro: IPR005288 [H]
Pfam domain/function: PF00890 FAD_binding_2; PF02910 Succ_DH_flav_C [H]
EC number: =1.4.3.16 [H]
Molecular weight: Translated: 58723; Mature: 58592
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSTAPVQHVFDVLVVGSGLAGLTAALQLAPTHRVAVLTKRAMNDGSSGWAQGGIAAVM CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEE AEDDSFDSHVDDTLVAGAGLSDPAATRFVVENAPKTIAWLQEMGVPFSQEDGQNGRLHLT ECCCCCCCCCCCHHEECCCCCCCHHEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEE REGGHSARRIVHVTDATGAAVQRTLIGQVRRTPNITLFENHTLVDLITARKLGHTSAAEP ECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHCCCCCCCCC DRCLGLYALDEATDKVLTFSAPHTILATGGAGKVYLYTTNPDTATGDGVAAAWRAGCRAA CCEEEEEEECCCCCCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC NMEFIQFHPTCLYHPHAKSFLISEAVRGEGGRLLLPESAGGTRFMPLHDERAELAPRDVV CEEEEEECCEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCHHHCCHHHHH ARAIDFEMKKHGLDCVHLDISHQPLAFILAHFPNIYARCLEFGIDISKQPIPVVPAAHYT HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC CGGVLTDLDGRTDLPGLYAIGETACTGLHGANRLASNSLVECMVFARAAAQDIVRTPRPR CCCEEECCCCCCCCCCEEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APVLPEWDDSRVTDADEAVVISHNWDELRRFMWDYVGIVRTNKRLERAAHRITLLQGEIQ CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYYAHFHVTRDLLELRNLVQAAELIVRSAQARHESRGLHFSRDYPAMAATATPTILVPPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCC A C >Mature Secondary Structure TDSTAPVQHVFDVLVVGSGLAGLTAALQLAPTHRVAVLTKRAMNDGSSGWAQGGIAAVM CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEE AEDDSFDSHVDDTLVAGAGLSDPAATRFVVENAPKTIAWLQEMGVPFSQEDGQNGRLHLT ECCCCCCCCCCCHHEECCCCCCCHHEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEE REGGHSARRIVHVTDATGAAVQRTLIGQVRRTPNITLFENHTLVDLITARKLGHTSAAEP ECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHCCCCCCCCC DRCLGLYALDEATDKVLTFSAPHTILATGGAGKVYLYTTNPDTATGDGVAAAWRAGCRAA CCEEEEEEECCCCCCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC NMEFIQFHPTCLYHPHAKSFLISEAVRGEGGRLLLPESAGGTRFMPLHDERAELAPRDVV CEEEEEECCEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCHHHCCHHHHH ARAIDFEMKKHGLDCVHLDISHQPLAFILAHFPNIYARCLEFGIDISKQPIPVVPAAHYT HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC CGGVLTDLDGRTDLPGLYAIGETACTGLHGANRLASNSLVECMVFARAAAQDIVRTPRPR CCCEEECCCCCCCCCCEEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APVLPEWDDSRVTDADEAVVISHNWDELRRFMWDYVGIVRTNKRLERAAHRITLLQGEIQ CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYYAHFHVTRDLLELRNLVQAAELIVRSAQARHESRGLHFSRDYPAMAATATPTILVPPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]