| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is groEL [H]
Identifier: 91786661
GI number: 91786661
Start: 777898
End: 779550
Strand: Reverse
Name: groEL [H]
Synonym: Bpro_0759
Alternate gene names: 91786661
Gene position: 779550-777898 (Counterclockwise)
Preceding gene: 91786662
Following gene: 91786660
Centisome position: 14.99
GC content: 59.65
Gene sequence:
>1653_bases ATGGCAGCAAAAGACGTCATTTTCGGCGGCGAAGCCCGCGCACGCATGGTCGAGGGTGTGAACATCCTGGCCAACGCCGT CAAGGTAACCCTGGGCCCCAAAGGCCGCAACGTGGTGCTCGAGCGCTCCTTCGGCGCCCCCACCGTGACCAAGGACGGTG TGTCCGTTGCTAAAGAAATCGAACTCAAGGACAAGCTGCAGAACATGGGCGCCCAGATGGTCAAGGAAGTCGCTTCCAAG ACGTCTGACATCGCAGGTGACGGCACCACGACCGCTACCGTTCTGGCTCAAGCCATTGTTCGCGAAGGCATGAAATATGT CGCCGCCGGCATGAACCCGATGGACCTGAAGCGCGGTATCGACAAGGCCGTCACGGCACTGGTCGAAGAGCTGAAGAAAG CATCGAAAGCCACCACCACCTCCAAAGAAATCGCCCAGGTCGGCTCGATTTCTGCCAACTCTGACGAAGCCATCGGCAAA ATCATTGCCGATGCGATGGACAAAGTCGGCAAGGAAGGCGTGATCACCGTGGAAGACGGCAAATCACTCGAAAGCGAACT CGACGTCGTTGAAGGCATGCAGTTTGACCGCGGCTACCTGTCGCCTTACTTCATCAACAACCCTGAAAAGCAGTCGGCGA TTCTGGACAACCCGTTTGTTCTGCTCTATGACAAGAAAATCAGCAACATCCGTGACCTGCTGCCTACCCTGGAACAAGTC GCCAAGGCTGGCCGTCCGCTGCTGATCATTGCCGAAGAAGTTGAAGGCGAAGCCCTGGCTACGCTGGTGGTCAACACCCT GCGCGGCATCCTGAAAGTGGTTGCTGTCAAGGCGCCAGGCTTCGGCGATCGCCGCAAAGCCATGCTGGAAGACATCGCCT GCCTGACCGGCGGCAAGGTGATCGCTGAAGAAGTTGGCATGTCGCTCGAAAAAGTGACGCTGGCCGACCTCGGCACGGCC AAGCGCATCGAAGTGGGCAAGGAAAACACCATCATCATCGACGGTGCCGGCGAAGCCAAGGACATCGAAGCCCGCGTCAA GCAGGTTCGCGTGCAGATCGAAGAAGCGACCAGCGACTACGACCGTGAAAAACTGCAAGAGCGCGTGGCCAAGCTGGCCG GCGGTGTTGCCGTGATCAAGGTTGGCGCTGCCACCGAAGTCGAAATGAAAGAAAAGAAAGCCCGCGTCGAAGACGCCCTG CACGCTACCCGCGCTGCCGTGGAAGAAGGCATTGTGGCTGGTGGCGGTGTGGCGCTGCTGCGCGCCAAGCAGGCTGCTGG CGCCATCAAGGGCGACAACGCTGACCAGGAAGCCGGCATCAAGCTGGTGCTGCGCGCCATCGAAGCGCCTCTGCGCGAGA TTGTGTACAACGCAGGTGGCGAAGCCTCTGTGGTGGTGAACGCTGTGTTGGCCGGCAAGGGCAACTACGGCTTCAATGCA GCCAACGACACCTACGGCGACATGATCGAAATGGGTATTCTGGATCCCACGAAAGTGACCCGCACGGCCCTGCAGAACGC TGCTTCCGTCGCATCGCTGATGCTGACGACCGAAGCCATGGTGGCCGAGGCTCCGAAAGATGAGTCTGGCGCCGGTGGCG GCATGCCAGGCGGCATGGGTGGAATGGGCGGCATGGGCGATATGGGCATGTAA
Upstream 100 bases:
>100_bases CGAGCTGCTCGTGATGAAAGAAGAAGACCTGTTTGCGGTCGTTGAGAAGTAATTTCTCGGCTCTTTCAATCCCTCATTAA CTGAATCTGGAGAATTAAAC
Downstream 100 bases:
>100_bases TATCCCGCTGAGCCGGCTCACCCTGGCTCAGACGCCAACAGGCCAAAAGGCCGCGGTGCTTTCGCACCGCGGCCTTTTTT TTGTGCGTGACCCGTCCTGA
Product: chaperonin GroEL
Products: NA
Alternate protein names: GroEL protein 1; Protein Cpn60 1 [H]
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MAAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASK TSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGK IIADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQV AKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKVIAEEVGMSLEKVTLADLGTA KRIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL HATRAAVEEGIVAGGGVALLRAKQAAGAIKGDNADQEAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGKGNYGFNA ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTEAMVAEAPKDESGAGGGMPGGMGGMGGMGDMGM
Sequences:
>Translated_550_residues MAAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASK TSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGK IIADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQV AKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKVIAEEVGMSLEKVTLADLGTA KRIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL HATRAAVEEGIVAGGGVALLRAKQAAGAIKGDNADQEAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGKGNYGFNA ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTEAMVAEAPKDESGAGGGMPGGMGGMGGMGDMGM >Mature_549_residues AAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKT SDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGKI IADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQVA KAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKVIAEEVGMSLEKVTLADLGTAK RIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALH ATRAAVEEGIVAGGGVALLRAKQAAGAIKGDNADQEAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGKGNYGFNAA NDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTEAMVAEAPKDESGAGGGMPGGMGGMGGMGDMGM
Specific function: Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chaperonin (HSP60) family [H]
Homologues:
Organism=Homo sapiens, GI41399285, Length=527, Percent_Identity=52.9411764705882, Blast_Score=541, Evalue=1e-154, Organism=Homo sapiens, GI31542947, Length=527, Percent_Identity=52.9411764705882, Blast_Score=541, Evalue=1e-154, Organism=Escherichia coli, GI1790586, Length=529, Percent_Identity=75.4253308128544, Blast_Score=791, Evalue=0.0, Organism=Caenorhabditis elegans, GI17555558, Length=530, Percent_Identity=52.8301886792453, Blast_Score=542, Evalue=1e-154, Organism=Caenorhabditis elegans, GI193210679, Length=226, Percent_Identity=50, Blast_Score=208, Evalue=7e-54, Organism=Caenorhabditis elegans, GI17564182, Length=559, Percent_Identity=24.3291592128801, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI32566944, Length=221, Percent_Identity=27.1493212669683, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323288, Length=526, Percent_Identity=52.6615969581749, Blast_Score=544, Evalue=1e-155, Organism=Saccharomyces cerevisiae, GI6322524, Length=387, Percent_Identity=25.0645994832041, Blast_Score=77, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322350, Length=573, Percent_Identity=23.0366492146597, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322446, Length=580, Percent_Identity=21.3793103448276, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24641193, Length=527, Percent_Identity=51.9924098671727, Blast_Score=544, Evalue=1e-155, Organism=Drosophila melanogaster, GI24641191, Length=527, Percent_Identity=51.9924098671727, Blast_Score=544, Evalue=1e-155, Organism=Drosophila melanogaster, GI45550936, Length=527, Percent_Identity=50.853889943074, Blast_Score=526, Evalue=1e-149, Organism=Drosophila melanogaster, GI45550132, Length=527, Percent_Identity=50.853889943074, Blast_Score=526, Evalue=1e-149, Organism=Drosophila melanogaster, GI45550935, Length=527, Percent_Identity=50.853889943074, Blast_Score=526, Evalue=1e-149, Organism=Drosophila melanogaster, GI17864606, Length=556, Percent_Identity=44.4244604316547, Blast_Score=473, Evalue=1e-133, Organism=Drosophila melanogaster, GI24584129, Length=526, Percent_Identity=37.4524714828897, Blast_Score=337, Evalue=1e-92, Organism=Drosophila melanogaster, GI19921262, Length=526, Percent_Identity=37.4524714828897, Blast_Score=337, Evalue=1e-92,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018370 - InterPro: IPR001844 - InterPro: IPR002423 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 57523; Mature: 57392
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00296 CHAPERONINS_CPN60
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI CCCCCEEECCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHH ELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGKIIADAMDKVGKEGVITVEDG HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC KSLESELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQV CCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH AKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKV HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH IAEEVGMSLEKVTLADLGTAKRIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDY HHHHHCCCHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCHH DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALL HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RAKQAAGAIKGDNADQEAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGKGNYGFNA HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCC ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTEAMVAEAPKDESGAGGGMPGGMG CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GMGGMGDMGM CCCCCCCCCC >Mature Secondary Structure AAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI CCCCEEECCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHH ELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGKIIADAMDKVGKEGVITVEDG HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC KSLESELDVVEGMQFDRGYLSPYFINNPEKQSAILDNPFVLLYDKKISNIRDLLPTLEQV CCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH AKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIACLTGGKV HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH IAEEVGMSLEKVTLADLGTAKRIEVGKENTIIIDGAGEAKDIEARVKQVRVQIEEATSDY HHHHHCCCHHHHHHHHCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCHH DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALL HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RAKQAAGAIKGDNADQEAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGKGNYGFNA HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCC ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTEAMVAEAPKDESGAGGGMPGGMG CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GMGGMGDMGM CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA