| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ygfA [C]
Identifier: 91786558
GI number: 91786558
Start: 663583
End: 664221
Strand: Direct
Name: ygfA [C]
Synonym: Bpro_0653
Alternate gene names: 91786558
Gene position: 663583-664221 (Clockwise)
Preceding gene: 91786556
Following gene: 91786559
Centisome position: 12.76
GC content: 62.13
Gene sequence:
>639_bases ATGGACAAATTAAGCACACGAAAAGCACTGGTGCAAGCCCGCCTCGATATGCCCGACCGCCTGCAGCGAGCCGATTTGCT GCAGCGGGTGATGCGCATCTGGCTGGTGGGCTCCCCCCATGAGGTGATAGGCGCCTATTGGCCCATCAAGGGGGAGTTTG ATCCGTTGCCCGCGCTGTACCGCTGGCAGGAAGACGCCATCCTGAGCCGGGATTCCCAATCAAACCAGGGTTCGGACCTT GAGGAACCGGCACAAATTGCGACGGAAAGCATAGCGAGCCGCTCGCCCCGCAAGATCGGCCTGCCGGTTGTCAACAAACT GCACAAGACCCTGACCTTCCATGCCTGGTACCCGGGCTGCCCCATGGAAGAGGACGCCTACGGCATTCCCAAGCCCAAGG ACACGGAAGTGATCGTGCCCACACTGCTGTTTGTGCCCTGCGTGGGCTACGGCCCGGGGGGTTACCGGCTGGGCTACGGC GGCGGCTTTTATGACCGCACGCTGGCGACGCTGCAGCCCCGGCCCGTGACGGTGGGGCTGGGCTTTACCAACGGGTGGCT GCCCGATATGGAGCCTGAGGCGCATGACATTCCGCTGGATGCGATTCTTAATGACAATGGGGTGGTTTGGCCGGTTTGA
Upstream 100 bases:
>100_bases TTTGGGCGGCGGCGGGGACCAGCAAACTGAGCGAGAGGGTGGCATACGCCGCAGCAAAGAACGCGGCGTTGAAATTTTTT TTGTATAGCATCGGGACATT
Downstream 100 bases:
>100_bases ATGGGTTGGTGGCGGCTTAGGGCGCTGTTGAATTGATAGCCTGCTGGCTTTTCTGAGGGCGGCTGGCCGGGGGTAGCCCG GCGGCTAGTAACTTTCTTTT
Product: 5-formyltetrahydrofolate cyclo-ligase
Products: NA
Alternate protein names: 5-Formyltetrahydrofolate Cyclo-Ligase Family Protein
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MDKLSTRKALVQARLDMPDRLQRADLLQRVMRIWLVGSPHEVIGAYWPIKGEFDPLPALYRWQEDAILSRDSQSNQGSDL EEPAQIATESIASRSPRKIGLPVVNKLHKTLTFHAWYPGCPMEEDAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYG GGFYDRTLATLQPRPVTVGLGFTNGWLPDMEPEAHDIPLDAILNDNGVVWPV
Sequences:
>Translated_212_residues MDKLSTRKALVQARLDMPDRLQRADLLQRVMRIWLVGSPHEVIGAYWPIKGEFDPLPALYRWQEDAILSRDSQSNQGSDL EEPAQIATESIASRSPRKIGLPVVNKLHKTLTFHAWYPGCPMEEDAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYG GGFYDRTLATLQPRPVTVGLGFTNGWLPDMEPEAHDIPLDAILNDNGVVWPV >Mature_212_residues MDKLSTRKALVQARLDMPDRLQRADLLQRVMRIWLVGSPHEVIGAYWPIKGEFDPLPALYRWQEDAILSRDSQSNQGSDL EEPAQIATESIASRSPRKIGLPVVNKLHKTLTFHAWYPGCPMEEDAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYG GGFYDRTLATLQPRPVTVGLGFTNGWLPDMEPEAHDIPLDAILNDNGVVWPV
Specific function: Unknown
COG id: COG0212
COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23633; Mature: 23633
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLSTRKALVQARLDMPDRLQRADLLQRVMRIWLVGSPHEVIGAYWPIKGEFDPLPALY CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCHHH RWQEDAILSRDSQSNQGSDLEEPAQIATESIASRSPRKIGLPVVNKLHKTLTFHAWYPGC HCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHEEEEEECCCC PMEEDAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYGGGFYDRTLATLQPRPVTVGL CCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHCCCCCEEEEE GFTNGWLPDMEPEAHDIPLDAILNDNGVVWPV CCCCCCCCCCCCCCCCCCCEEEECCCCCEECC >Mature Secondary Structure MDKLSTRKALVQARLDMPDRLQRADLLQRVMRIWLVGSPHEVIGAYWPIKGEFDPLPALY CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCHHH RWQEDAILSRDSQSNQGSDLEEPAQIATESIASRSPRKIGLPVVNKLHKTLTFHAWYPGC HCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHEEEEEECCCC PMEEDAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYGGGFYDRTLATLQPRPVTVGL CCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHCCCCCEEEEE GFTNGWLPDMEPEAHDIPLDAILNDNGVVWPV CCCCCCCCCCCCCCCCCCCEEEECCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA