| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is mdlA [H]
Identifier: 91786444
GI number: 91786444
Start: 535551
End: 536645
Strand: Direct
Name: mdlA [H]
Synonym: Bpro_0536
Alternate gene names: 91786444
Gene position: 535551-536645 (Clockwise)
Preceding gene: 91786443
Following gene: 91786449
Centisome position: 10.3
GC content: 63.84
Gene sequence:
>1095_bases ATGAGCCCGCAACATCTCACGGTGCGGGCCATTGAAGCAACACTGGTGGTTGTACCCATGCGGCGGGCACTTGGCACCAG CGCCATGCGGGTGACACAGGCACCACTGCTGCTATTGGACTTGCAAACAGAAGAAGGCATTACGGGCCGTGCGTACCTGT TCTGCTACCTTGAAGCGGCCGGCGCGGCCGCTCTTGCGCTGGTACGCGACATCAACGCCGAGCTTGTGGGGAAAACGGCA GCGCCCGCCGCGGTGCGGCGTGCGCTGGAAGCGCGGTTTCGCCTCCTGGGCGCACGCGGTATCGTGTCCATGCTCATGGC GGGGATTGACATCGCCTGTTGGGACGCGCTGGCCATTTGCGCCGGGCTGCCACTTGCAACGCTACTGGGCGCCCAGCCCA GGCCTATCCCCGCCTACAACAGCAACGGCCTGGGTTTGCTGGACGCGCGGGCCGCGGCCGATGAGGCCCTGGAACTGGTC AGTGAGGGGTTTCATGCCATCAAAATGCGCCTGGGGCGCCCGCTGGCCAAAGACGACTTGGCCGCCGTGCGGGCTGTCAA GCAAGCCCTACCAGCCGGGATTGCGCTGATGGCCGACTTCAACCAGGCGTTAAGCCGCAACGCTGCTGTCGAGCGATGCC AGCAGCTTGATGATGAGGGCCTGTACTGGATTGAAGAACCGGTTCGCCATGACGATTACGCCACCAGTGCCGAACTGACC GCCTTGCTGCGCACACCCGTCCAGATTGGGGAAAACTTTGCCGGCCCTCGTGCCATGGCCCAGGCACTGGCGCAGCGCGC CTGCGACTTTGTCATGCCGGACCTGGAACGCATCGGCGGCGTGAGTGGCTGGATCGATGCCTCGGCGCTTGCCAATGTTG CTGGCATTGAATTTTCGTCGCACCTGTTTCCCGAAGTCAGTGCGCACCTGCTGGCAGGCACGCCTACAGCACACTGGATC GAGTACGTCGATTGGGCCGACGCCATTCTGCAGGAGCCGCTGAAAGTGGTGGACGGCTGCCTGTCAGCGCCCGACCGGCC TGGCAACGGCCTGTCTTGGGATCTGGGCGCCGTGAAGCACTACCAGAAAGTGTGA
Upstream 100 bases:
>100_bases GCGGCGACGTGGTGCACAGGGGCGCCCGCCTCGGGGTGGCCACGCCCTGCAATCGGGCCATCCTTGATATTCTGTCTGTG CACAGTGAGGGGCGTACTGC
Downstream 100 bases:
>100_bases GTCGTGAGGCCCTTGTCGAGGAACACAGGATGAAGCCTTCCAATCGCCCACGGTCGGCCCGACTCATGCACAGCGGAGTC AGCAGGCATATGAACGGCGC
Product: mandelate racemase/muconate lactonizing protein
Products: NA
Alternate protein names: MR [H]
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MSPQHLTVRAIEATLVVVPMRRALGTSAMRVTQAPLLLLDLQTEEGITGRAYLFCYLEAAGAAALALVRDINAELVGKTA APAAVRRALEARFRLLGARGIVSMLMAGIDIACWDALAICAGLPLATLLGAQPRPIPAYNSNGLGLLDARAAADEALELV SEGFHAIKMRLGRPLAKDDLAAVRAVKQALPAGIALMADFNQALSRNAAVERCQQLDDEGLYWIEEPVRHDDYATSAELT ALLRTPVQIGENFAGPRAMAQALAQRACDFVMPDLERIGGVSGWIDASALANVAGIEFSSHLFPEVSAHLLAGTPTAHWI EYVDWADAILQEPLKVVDGCLSAPDRPGNGLSWDLGAVKHYQKV
Sequences:
>Translated_364_residues MSPQHLTVRAIEATLVVVPMRRALGTSAMRVTQAPLLLLDLQTEEGITGRAYLFCYLEAAGAAALALVRDINAELVGKTA APAAVRRALEARFRLLGARGIVSMLMAGIDIACWDALAICAGLPLATLLGAQPRPIPAYNSNGLGLLDARAAADEALELV SEGFHAIKMRLGRPLAKDDLAAVRAVKQALPAGIALMADFNQALSRNAAVERCQQLDDEGLYWIEEPVRHDDYATSAELT ALLRTPVQIGENFAGPRAMAQALAQRACDFVMPDLERIGGVSGWIDASALANVAGIEFSSHLFPEVSAHLLAGTPTAHWI EYVDWADAILQEPLKVVDGCLSAPDRPGNGLSWDLGAVKHYQKV >Mature_363_residues SPQHLTVRAIEATLVVVPMRRALGTSAMRVTQAPLLLLDLQTEEGITGRAYLFCYLEAAGAAALALVRDINAELVGKTAA PAAVRRALEARFRLLGARGIVSMLMAGIDIACWDALAICAGLPLATLLGAQPRPIPAYNSNGLGLLDARAAADEALELVS EGFHAIKMRLGRPLAKDDLAAVRAVKQALPAGIALMADFNQALSRNAAVERCQQLDDEGLYWIEEPVRHDDYATSAELTA LLRTPVQIGENFAGPRAMAQALAQRACDFVMPDLERIGGVSGWIDASALANVAGIEFSSHLFPEVSAHLLAGTPTAHWIE YVDWADAILQEPLKVVDGCLSAPDRPGNGLSWDLGAVKHYQKV
Specific function: Probably Involved In The Degradation Of Homoserine Lactone (Hsl) Or Of A Metabolite Of Hsl That Signals Starvation. [C]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018110 - InterPro: IPR015654 - InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: =5.1.2.2 [H]
Molecular weight: Translated: 38825; Mature: 38694
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS00909 MR_MLE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPQHLTVRAIEATLVVVPMRRALGTSAMRVTQAPLLLLDLQTEEGITGRAYLFCYLEAA CCCCCEEEEEHHHHHEEEEHHHHHCHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHH GAAALALVRDINAELVGKTAAPAAVRRALEARFRLLGARGIVSMLMAGIDIACWDALAIC HHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AGLPLATLLGAQPRPIPAYNSNGLGLLDARAAADEALELVSEGFHAIKMRLGRPLAKDDL HCCHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH AAVRAVKQALPAGIALMADFNQALSRNAAVERCQQLDDEGLYWIEEPVRHDDYATSAELT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH ALLRTPVQIGENFAGPRAMAQALAQRACDFVMPDLERIGGVSGWIDASALANVAGIEFSS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHCCCHHH HLFPEVSAHLLAGTPTAHWIEYVDWADAILQEPLKVVDGCLSAPDRPGNGLSWDLGAVKH HHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH YQKV HHCC >Mature Secondary Structure SPQHLTVRAIEATLVVVPMRRALGTSAMRVTQAPLLLLDLQTEEGITGRAYLFCYLEAA CCCCEEEEEHHHHHEEEEHHHHHCHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHH GAAALALVRDINAELVGKTAAPAAVRRALEARFRLLGARGIVSMLMAGIDIACWDALAIC HHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AGLPLATLLGAQPRPIPAYNSNGLGLLDARAAADEALELVSEGFHAIKMRLGRPLAKDDL HCCHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH AAVRAVKQALPAGIALMADFNQALSRNAAVERCQQLDDEGLYWIEEPVRHDDYATSAELT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH ALLRTPVQIGENFAGPRAMAQALAQRACDFVMPDLERIGGVSGWIDASALANVAGIEFSS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHCCCHHH HLFPEVSAHLLAGTPTAHWIEYVDWADAILQEPLKVVDGCLSAPDRPGNGLSWDLGAVKH HHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH YQKV HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2831968; 2271624; 2215699; 1909893; 1892834; 7893689; 7893690 [H]