| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is recG [H]
Identifier: 91786378
GI number: 91786378
Start: 483969
End: 486164
Strand: Direct
Name: recG [H]
Synonym: Bpro_0468
Alternate gene names: 91786378
Gene position: 483969-486164 (Clockwise)
Preceding gene: 91786371
Following gene: 91786380
Centisome position: 9.31
GC content: 66.3
Gene sequence:
>2196_bases ATGTCGCCACCCGGTGCTCCTGCCCGAAAAGCCGCCACCTTCGAGGAGATGGCCGGGGACAGGGGTGCGCCCAAAGCCCA GGTTGAAAAACCCCAGGCCAAATCCCCCGCACAAAAGGCCCTCGAAAAACTGGGTCTGCGCCGCGACATTGACCTGGCCC TGCATCTACCCCTGCGCTATGAGGATGAAACCCGCATCGTGCAGCTGCGCGATGCGCGGGACGGCGATATGGTGCAGATC GAAGCACAGGTGACGCACAGCGAAGTCACGTTTCGGCCGCGCCGCCAGTTGCGGGTGACGGTGGACGACGGCAGCGACAC CTGCGTGCTGCGCTTCCTCAACTTCTACCCCTCGCACCAGAAGACCCTGAGCGTCGGTGCCCGGGTGCGGGTGCGCGGCG AGATCCGGGGCGGCTCCTTCGCGGGAGGTTTTGGCCGCGAGATGGTGCACCCCAGCTTCAAGCTGGCGGGCGGCGAACTG CCCGGCGCGCTGACGCCGGTGTACCCGACAGTGGCCAGTTTGCCGCAGGCCTATCTGCGCAAGGCCGTGCTCAGCGGCCT GGCCCGCGCCGACCTCAGTGAAACCATCCCCCAGCAATTTTTGAATAAAAACCTGCCGCAGCCCCTGTCGGATTTGCGGG AAGCGCTGCAGTTTTTGCACCACCCCACGCCGGATGTGATGCTGTCCACACTGGAAGACCGCAGCCATCCGGCGTGGCAG CGGCTGAAGGCCGAGGAACTGCTGGCCCAGCAGCTGTCGCAGCTGCAGGCCCGCCGCGGGCGTGCCGCCATGCGTGCCCC GGCCCTGGGCGGCCAGTCGATGCGCAACCCCGCAGCGGATGATGGGGCGAGCCTGCAGGGGCCACACTGCACCCTGCACG AGCAGCTGCTGGAGCGTCTGCCCTTTCGGCTGACGCCGGCCCAGCAGCGTGTCTGCGCAGAGATAGACGCCGACCTGCAG AAAAGCATTCCCATGCACCGCCTGCTGCAGGGCGACGTGGGCTCCGGCAAGACCGTGGTGGCGGCGCTGGCAACGGCCCG CTGCATGGGTGCCGGCTGGCAATGCGCGCTGATGGCGCCCACCGAAATCCTGGCCGAGCAGCACTTTCGCAAACTGATCG GCTGGCTGGAGCCGCTGGGCATCAGGACCGCCTGGCTCACCGGCAGCCAGAAAGCCAAAGAGCGGCGCGAGGCGCTGGCG CTGATTAAAAGCGGCGAGGCGGGCCTGGTCATTGGCACGCACGCCGTAATCCAGGACAAGGTCGAGTTCAAAAATCTCGC GCTGGCCATCATTGACGAGCAGCACCGCTTTGGCGTGGCGCAGCGGCTGGCATTGCGCAGCAAGATGACTGAGGGCGGGC AGGAACCCCATTTGCTGATGATGACCGCCACGCCGATTCCGCGCACGCTGGCCATGAGCTACTACGCCGACCTGGACGTC TCGACGATTGACGAGCTGCCACCCGGCCGCACCCCCATCGTGACCAAGGTGGTGAACGATGCCCGGCGCGACGAAGTGAT TGAGCGCATACGCGGCCAGCTTCTAGAGGGCCGGCAGGTCTACTGGGTCTGTCCGCTGATTGAAGAGAGCGAGTCAATCG ACCTGATCAACGCCACCCAGACGCATGAAGCCTTGAGCGCGGCCTTGCCGGGTGTCGGGGTGGGCCTGTTGCATTCGCGC ATGCCGGTCGCCGAGAAAAAAGCCGTGATGAGCCTGTTCACCGAGGGCGTGATGGGCGTGCTGGTCAGCACCACCGTGAT CGAGGTGGGGGTGGATGTACCCAATGCCTCGCTGATGGTGATCGAGCATGCCGAGCGTTTTGGCCTCTCCCAGCTGCACC AGCTGCGCGGCCGGGTCGGCCGGGGCGCAGCGGCGTCAGCCTGCGTGCTGCTGTATTCGACCGGCGACGCGCCGCGGCTC GGCGAGACGGCGCGGGAGCGCCTCAAGGCCATGGTCCAGACCCATGACGGGTTTGAAATCGCCCGGCGTGATCTGGAAAT TCGCGGTCCCGGTGAATTTCTGGGGGCCCGCCAGTCGGGCGCGCCCTTGCTGCGGTTTGCCGACCTGGCCACCGATACCC AGCTGCTGGCCTGGGCGCGGGGGGTAGCGCCGGTGATGCTGGATCAGCATGCCGGGCTGGCGCAGCGGCATATTTTGCGG TGGTTGGGGGGGAAGGCTGAGTTTTTGAAGGCTTGA
Upstream 100 bases:
>100_bases GGTGAGTGCCAGCGAAAAGGAGAATGACGGTATTCAAGCGGATTTTTAGATGTTTGCAAGCGGTCAACTGCGGTTTCTAG GTTGACGGCACAATTGTCCC
Downstream 100 bases:
>100_bases GTTGACGATTAGCGTTGGCTCAACGGATGGCCGCCGTAGGTGGCCAGTCCGCTGGAGTAGCTTGTTTGCCTAGTAGAAGT CGACATACCTTGCCCAAAAA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MSPPGAPARKAATFEEMAGDRGAPKAQVEKPQAKSPAQKALEKLGLRRDIDLALHLPLRYEDETRIVQLRDARDGDMVQI EAQVTHSEVTFRPRRQLRVTVDDGSDTCVLRFLNFYPSHQKTLSVGARVRVRGEIRGGSFAGGFGREMVHPSFKLAGGEL PGALTPVYPTVASLPQAYLRKAVLSGLARADLSETIPQQFLNKNLPQPLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQ RLKAEELLAQQLSQLQARRGRAAMRAPALGGQSMRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQ KSIPMHRLLQGDVGSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAKERREALA LIKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRSKMTEGGQEPHLLMMTATPIPRTLAMSYYADLDV STIDELPPGRTPIVTKVVNDARRDEVIERIRGQLLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSR MPVAEKKAVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRL GETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLATDTQLLAWARGVAPVMLDQHAGLAQRHILR WLGGKAEFLKA
Sequences:
>Translated_731_residues MSPPGAPARKAATFEEMAGDRGAPKAQVEKPQAKSPAQKALEKLGLRRDIDLALHLPLRYEDETRIVQLRDARDGDMVQI EAQVTHSEVTFRPRRQLRVTVDDGSDTCVLRFLNFYPSHQKTLSVGARVRVRGEIRGGSFAGGFGREMVHPSFKLAGGEL PGALTPVYPTVASLPQAYLRKAVLSGLARADLSETIPQQFLNKNLPQPLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQ RLKAEELLAQQLSQLQARRGRAAMRAPALGGQSMRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQ KSIPMHRLLQGDVGSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAKERREALA LIKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRSKMTEGGQEPHLLMMTATPIPRTLAMSYYADLDV STIDELPPGRTPIVTKVVNDARRDEVIERIRGQLLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSR MPVAEKKAVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRL GETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLATDTQLLAWARGVAPVMLDQHAGLAQRHILR WLGGKAEFLKA >Mature_730_residues SPPGAPARKAATFEEMAGDRGAPKAQVEKPQAKSPAQKALEKLGLRRDIDLALHLPLRYEDETRIVQLRDARDGDMVQIE AQVTHSEVTFRPRRQLRVTVDDGSDTCVLRFLNFYPSHQKTLSVGARVRVRGEIRGGSFAGGFGREMVHPSFKLAGGELP GALTPVYPTVASLPQAYLRKAVLSGLARADLSETIPQQFLNKNLPQPLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQR LKAEELLAQQLSQLQARRGRAAMRAPALGGQSMRNPAADDGASLQGPHCTLHEQLLERLPFRLTPAQQRVCAEIDADLQK SIPMHRLLQGDVGSGKTVVAALATARCMGAGWQCALMAPTEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAKERREALAL IKSGEAGLVIGTHAVIQDKVEFKNLALAIIDEQHRFGVAQRLALRSKMTEGGQEPHLLMMTATPIPRTLAMSYYADLDVS TIDELPPGRTPIVTKVVNDARRDEVIERIRGQLLEGRQVYWVCPLIEESESIDLINATQTHEALSAALPGVGVGLLHSRM PVAEKKAVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLG ETARERLKAMVQTHDGFEIARRDLEIRGPGEFLGARQSGAPLLRFADLATDTQLLAWARGVAPVMLDQHAGLAQRHILRW LGGKAEFLKA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=688, Percent_Identity=48.546511627907, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI1787357, Length=395, Percent_Identity=36.4556962025316, Blast_Score=227, Evalue=2e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 79968; Mature: 79837
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPGAPARKAATFEEMAGDRGAPKAQVEKPQAKSPAQKALEKLGLRRDIDLALHLPLRY CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCEEE EDETRIVQLRDARDGDMVQIEAQVTHSEVTFRPRRQLRVTVDDGSDTCVLRFLNFYPSHQ CCCCEEEEEECCCCCCEEEEEEEECCCCEEECCCCEEEEEEECCCCHHHHHHHHHCCCCC KTLSVGARVRVRGEIRGGSFAGGFGREMVHPSFKLAGGELPGALTPVYPTVASLPQAYLR HHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH KAVLSGLARADLSETIPQQFLNKNLPQPLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQ HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH RLKAEELLAQQLSQLQARRGRAAMRAPALGGQSMRNPAADDGASLQGPHCTLHEQLLERL HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC PFRLTPAQQRVCAEIDADLQKSIPMHRLLQGDVGSGKTVVAALATARCMGAGWQCALMAP CCCCCHHHHHHHHHHCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECH TEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAKERREALALIKSGEAGLVIGTHAVIQDK HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHH VEFKNLALAIIDEQHRFGVAQRLALRSKMTEGGQEPHLLMMTATPIPRTLAMSYYADLDV HHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCH STIDELPPGRTPIVTKVVNDARRDEVIERIRGQLLEGRQVYWVCPLIEESESIDLINATQ HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEECCCCCCEEEECHH THEALSAALPGVGVGLLHSRMPVAEKKAVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMV HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE IEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGETARERLKAMVQTHDGFEI EECHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH ARRDLEIRGPGEFLGARQSGAPLLRFADLATDTQLLAWARGVAPVMLDQHAGLAQRHILR HHHCCEECCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHH WLGGKAEFLKA HHCCCHHHHCC >Mature Secondary Structure SPPGAPARKAATFEEMAGDRGAPKAQVEKPQAKSPAQKALEKLGLRRDIDLALHLPLRY CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCEEE EDETRIVQLRDARDGDMVQIEAQVTHSEVTFRPRRQLRVTVDDGSDTCVLRFLNFYPSHQ CCCCEEEEEECCCCCCEEEEEEEECCCCEEECCCCEEEEEEECCCCHHHHHHHHHCCCCC KTLSVGARVRVRGEIRGGSFAGGFGREMVHPSFKLAGGELPGALTPVYPTVASLPQAYLR HHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH KAVLSGLARADLSETIPQQFLNKNLPQPLSDLREALQFLHHPTPDVMLSTLEDRSHPAWQ HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH RLKAEELLAQQLSQLQARRGRAAMRAPALGGQSMRNPAADDGASLQGPHCTLHEQLLERL HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC PFRLTPAQQRVCAEIDADLQKSIPMHRLLQGDVGSGKTVVAALATARCMGAGWQCALMAP CCCCCHHHHHHHHHHCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECH TEILAEQHFRKLIGWLEPLGIRTAWLTGSQKAKERREALALIKSGEAGLVIGTHAVIQDK HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHH VEFKNLALAIIDEQHRFGVAQRLALRSKMTEGGQEPHLLMMTATPIPRTLAMSYYADLDV HHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCH STIDELPPGRTPIVTKVVNDARRDEVIERIRGQLLEGRQVYWVCPLIEESESIDLINATQ HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEECCCCCCEEEECHH THEALSAALPGVGVGLLHSRMPVAEKKAVMSLFTEGVMGVLVSTTVIEVGVDVPNASLMV HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE IEHAERFGLSQLHQLRGRVGRGAAASACVLLYSTGDAPRLGETARERLKAMVQTHDGFEI EECHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH ARRDLEIRGPGEFLGARQSGAPLLRFADLATDTQLLAWARGVAPVMLDQHAGLAQRHILR HHHCCEECCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHH WLGGKAEFLKA HHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]