| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91786370
Identifier: 91786370
GI number: 91786370
Start: 474790
End: 475617
Strand: Direct
Name: 91786370
Synonym: Bpro_0460
Alternate gene names: NA
Gene position: 474790-475617 (Clockwise)
Preceding gene: 91786369
Following gene: 91786371
Centisome position: 9.13
GC content: 66.55
Gene sequence:
>828_bases ATGAATTGCCCAACGAGTTGTCTCACGAATCACCTGGGTGTCGGCTTGCTGGCGGCGGCCTTGCTGGCCGCGCCTGCCGC CCATGCGGGCCGCTCCTGCGAAACCGGAAAACCCACCACCCGCACGGTCGAGCGCGGCCTGACGCTGGCCGGGAAAACGC TGGCCTCGCTCAATGCCAGTGGCCAGAAAGTGGTGGTGCTGGCGCGCGCCGGGCAGGACCTGAGCAAGTATGGGGTGCGC TACTCGCACCTGGGGCTGGCCTACCAGCAAAGCGATGGCCAGGGCGGCAGCACCTGGCGCGTGCTGCACAAGCTCAACGA GTGCGGCACCAGCGGATCGGCCATTTACCGCCAGGGGCTCGGTGAGTTCTTTCTGGACGATTTATGGCGTTTTGAAGCCG CCTGGCTGCCGCTCACGCCCGAGGCGCAGGCGCGCCTGCTGAGCCTGCTGCAGGACCCGGGCCGTGCGCTCAGCCTGCAC CACAAGCCCTACAGCATCGTGAGCTACGCCTGGGGCCGCAAGTACCAGCAGTCCAACCAGTGGGCGATTGAAACCCTGGC CGCCGCCATGGAGCCCGGCGTCAACTCGCGCGAGCGGGCGCAAGCCTGGCTGCAGTTCAAGGCCTATGAACCGGCGGTGC TCAGGATTGGCCCACTGACGCGGCTGGGCGGGCGCCTGACTGCCGCCAATGTGGCGTTCGACGACCATCCCAATGACAAG CGCTTTTCCGACCGCATCGAGACCGTCACCGTCGACTCGGTGTTTGACTGGCTGCCGCGGGCGCAGCTGGCGGCACCGGG CCAAACCCCGACAATCGTCAAACTTTAA
Upstream 100 bases:
>100_bases ACGCGCTGGGCCGCGCCTTGCTGCACAACGAGCGCCTGACCCACTGACCTGCCGACCCAGGTAACCATCAAGCAAGCCAT CAAGAAAGAGAAGGCCCATC
Downstream 100 bases:
>100_bases TCTTGTCATTCGGTCCGACTGCTTCAAACAAAAAGGAACCCATCATGAGCAAAGGTTTGCGACTCTCCGAAAAATGGTTT CACCGCGGCCTGTGGCTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Exported Outer Membrane Protein
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MNCPTSCLTNHLGVGLLAAALLAAPAAHAGRSCETGKPTTRTVERGLTLAGKTLASLNASGQKVVVLARAGQDLSKYGVR YSHLGLAYQQSDGQGGSTWRVLHKLNECGTSGSAIYRQGLGEFFLDDLWRFEAAWLPLTPEAQARLLSLLQDPGRALSLH HKPYSIVSYAWGRKYQQSNQWAIETLAAAMEPGVNSRERAQAWLQFKAYEPAVLRIGPLTRLGGRLTAANVAFDDHPNDK RFSDRIETVTVDSVFDWLPRAQLAAPGQTPTIVKL
Sequences:
>Translated_275_residues MNCPTSCLTNHLGVGLLAAALLAAPAAHAGRSCETGKPTTRTVERGLTLAGKTLASLNASGQKVVVLARAGQDLSKYGVR YSHLGLAYQQSDGQGGSTWRVLHKLNECGTSGSAIYRQGLGEFFLDDLWRFEAAWLPLTPEAQARLLSLLQDPGRALSLH HKPYSIVSYAWGRKYQQSNQWAIETLAAAMEPGVNSRERAQAWLQFKAYEPAVLRIGPLTRLGGRLTAANVAFDDHPNDK RFSDRIETVTVDSVFDWLPRAQLAAPGQTPTIVKL >Mature_275_residues MNCPTSCLTNHLGVGLLAAALLAAPAAHAGRSCETGKPTTRTVERGLTLAGKTLASLNASGQKVVVLARAGQDLSKYGVR YSHLGLAYQQSDGQGGSTWRVLHKLNECGTSGSAIYRQGLGEFFLDDLWRFEAAWLPLTPEAQARLLSLLQDPGRALSLH HKPYSIVSYAWGRKYQQSNQWAIETLAAAMEPGVNSRERAQAWLQFKAYEPAVLRIGPLTRLGGRLTAANVAFDDHPNDK RFSDRIETVTVDSVFDWLPRAQLAAPGQTPTIVKL
Specific function: Unknown
COG id: COG4727
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29906; Mature: 29906
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNCPTSCLTNHLGVGLLAAALLAAPAAHAGRSCETGKPTTRTVERGLTLAGKTLASLNAS CCCCHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC GQKVVVLARAGQDLSKYGVRYSHLGLAYQQSDGQGGSTWRVLHKLNECGTSGSAIYRQGL CCEEEEEEECCCCHHHHCCCHHHHCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH GEFFLDDLWRFEAAWLPLTPEAQARLLSLLQDPGRALSLHHKPYSIVSYAWGRKYQQSNQ HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCH WAIETLAAAMEPGVNSRERAQAWLQFKAYEPAVLRIGPLTRLGGRLTAANVAFDDHPNDK HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHCCEEEEEEEEECCCCCCC RFSDRIETVTVDSVFDWLPRAQLAAPGQTPTIVKL HHHHHHHEEEHHHHHHHCCCHHHCCCCCCCCEEEC >Mature Secondary Structure MNCPTSCLTNHLGVGLLAAALLAAPAAHAGRSCETGKPTTRTVERGLTLAGKTLASLNAS CCCCHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC GQKVVVLARAGQDLSKYGVRYSHLGLAYQQSDGQGGSTWRVLHKLNECGTSGSAIYRQGL CCEEEEEEECCCCHHHHCCCHHHHCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH GEFFLDDLWRFEAAWLPLTPEAQARLLSLLQDPGRALSLHHKPYSIVSYAWGRKYQQSNQ HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCH WAIETLAAAMEPGVNSRERAQAWLQFKAYEPAVLRIGPLTRLGGRLTAANVAFDDHPNDK HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHCCEEEEEEEEECCCCCCC RFSDRIETVTVDSVFDWLPRAQLAAPGQTPTIVKL HHHHHHHEEEHHHHHHHCCCHHHCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA