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The map label for this gene is intR [H]

Identifier: 91786281

GI number: 91786281

Start: 385272

End: 386687

Strand: Reverse

Name: intR [H]

Synonym: Bpro_0371

Alternate gene names: 91786281

Gene position: 386687-385272 (Counterclockwise)

Preceding gene: 91786282

Following gene: 91786280

Centisome position: 7.44

GC content: 58.83

Gene sequence:

>1416_bases
ATGGGTAGTATTCGCCGGCTTGAAAGCCAGGGAACGCTGTTCATGGACTTCCGATATGCGGGACAGCGTCTGCGTGAGTA
CACGATGCTCCCGGATATGCCTGCCAACCGCAAGCGCCTCCAAAAAGCCCTGGATCGCATCGAAACCGACATAGCCCTCG
GCACCTTCGATTACGAGAAAACTTTCGGCAAGCCCTTGCCGCAACCAGAACCCAAGACAAAAGACGGCTCGGTAGATCGC
ACCGCCCGATCCGACGGACTCCCGGTGCTCTCCCGCAACGGCACACCGCTCTTCGGGGAGTTTGCCCAGCAATGGTTCAC
GGAAGTGGAGGTGAGCTGGCGGCGCAGCTACCGCATCACCCAGAAAGGAGCGCTGGACAAGTACCTCCTCCCGTTTTTTG
GGGACAAAGAGGTCGGCCACATCACCAAGGCAGACGTACTGGCTTTTCGGGCATCACTCGCCAAAGTTACCACCCGAAAA
AGCCAGGGAACACTGTCCAATCGACGCGTCAATGCGGTGATGAAACCGCTGCGCCAGATCCTCAACGAAGCCGCCGACCG
GTTTGAGTTTAATTCCGCTTTCAGGAATATCAAACCGCTCAAGATGAAACGCAGCGATGTACAGCCGTTCACCCTGGACG
AGGTTGAACTGATCCTGAACACGGTGAGGGTGGATTACCGGAACTACTTCAACGTCAGATTCTTCACCGGCATGCGTACC
GGAGAAGCGCATGGGCTGAAGTGGAAGTACGTCGACTTCGAGCGCCGCTTGATTCTGGTGCGTGAGTCGATCGTCCTGAA
TGAGGAAGATGAACTCAAGACGGACGGTAGTGTGCGTGACATTCATATGAGCCAGGTGGTGTATGACGCCCTGAAGGCCC
AGTACCAGGCCGCCGGGGAGTTTTCAGAATACGTTTTCTGTAGCCGGTCCGGCCAACCGATCAACAACCAGAATTTTTTG
AACCGGGTATGGAACCCTTTGCTGCGGCATCTGGGACTGGAACACCGCCGGGCTTACCAGATGCGCCATACGGCGGCCAC
CTTGTGGCTGGCCTCCGGCGAGGCGCCGGAATGGATCGCACGTCAGCTTGGCCACACCAGCACAGAGATGCTGTTCCGGG
TCTATAGCCGCTATGTGCCCAACCTGACTCGCCAGGACGGCTCCGCCATGGAACGGCTGCTGGCGAGTCGCATGTCGACG
GGTGCCAATGTCCGGGCAGACAACCCGCCTGCACCGGTCAACAAGGTTGTGCCGCAGCCCCTACCCAAACTGCGTGGCAT
CACTGGAGGCCGTGCCACCCGTCCGAAATCGGGACGCACCAATGTACTTCCCGATTACTTCGGTGACGCAGAACCCCAGC
CACCGCCCGCTTGGCACAGGGCTCCAGTCAACGGCACCGGTCCCCGGCACGCTTGA

Upstream 100 bases:

>100_bases
CGCAAGACCCTCTATATCTGGGAGCACATCGAGAACGATATGGGCCAGGTCTCTGGCAGCGGTCCGGTTTCGATCCCTAT
GGCCAACGGAGGTGTTCTTC

Downstream 100 bases:

>100_bases
CCTAGGACCTCCACCTCAACCGCCAACCCCATCGACGTCGCCGCCGCAAAGCCATTTGCAGCGGTCCGGGGGAAGGCTTT
GCCCAAAGTTTTAGCAAACA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MGSIRRLESQGTLFMDFRYAGQRLREYTMLPDMPANRKRLQKALDRIETDIALGTFDYEKTFGKPLPQPEPKTKDGSVDR
TARSDGLPVLSRNGTPLFGEFAQQWFTEVEVSWRRSYRITQKGALDKYLLPFFGDKEVGHITKADVLAFRASLAKVTTRK
SQGTLSNRRVNAVMKPLRQILNEAADRFEFNSAFRNIKPLKMKRSDVQPFTLDEVELILNTVRVDYRNYFNVRFFTGMRT
GEAHGLKWKYVDFERRLILVRESIVLNEEDELKTDGSVRDIHMSQVVYDALKAQYQAAGEFSEYVFCSRSGQPINNQNFL
NRVWNPLLRHLGLEHRRAYQMRHTAATLWLASGEAPEWIARQLGHTSTEMLFRVYSRYVPNLTRQDGSAMERLLASRMST
GANVRADNPPAPVNKVVPQPLPKLRGITGGRATRPKSGRTNVLPDYFGDAEPQPPPAWHRAPVNGTGPRHA

Sequences:

>Translated_471_residues
MGSIRRLESQGTLFMDFRYAGQRLREYTMLPDMPANRKRLQKALDRIETDIALGTFDYEKTFGKPLPQPEPKTKDGSVDR
TARSDGLPVLSRNGTPLFGEFAQQWFTEVEVSWRRSYRITQKGALDKYLLPFFGDKEVGHITKADVLAFRASLAKVTTRK
SQGTLSNRRVNAVMKPLRQILNEAADRFEFNSAFRNIKPLKMKRSDVQPFTLDEVELILNTVRVDYRNYFNVRFFTGMRT
GEAHGLKWKYVDFERRLILVRESIVLNEEDELKTDGSVRDIHMSQVVYDALKAQYQAAGEFSEYVFCSRSGQPINNQNFL
NRVWNPLLRHLGLEHRRAYQMRHTAATLWLASGEAPEWIARQLGHTSTEMLFRVYSRYVPNLTRQDGSAMERLLASRMST
GANVRADNPPAPVNKVVPQPLPKLRGITGGRATRPKSGRTNVLPDYFGDAEPQPPPAWHRAPVNGTGPRHA
>Mature_470_residues
GSIRRLESQGTLFMDFRYAGQRLREYTMLPDMPANRKRLQKALDRIETDIALGTFDYEKTFGKPLPQPEPKTKDGSVDRT
ARSDGLPVLSRNGTPLFGEFAQQWFTEVEVSWRRSYRITQKGALDKYLLPFFGDKEVGHITKADVLAFRASLAKVTTRKS
QGTLSNRRVNAVMKPLRQILNEAADRFEFNSAFRNIKPLKMKRSDVQPFTLDEVELILNTVRVDYRNYFNVRFFTGMRTG
EAHGLKWKYVDFERRLILVRESIVLNEEDELKTDGSVRDIHMSQVVYDALKAQYQAAGEFSEYVFCSRSGQPINNQNFLN
RVWNPLLRHLGLEHRRAYQMRHTAATLWLASGEAPEWIARQLGHTSTEMLFRVYSRYVPNLTRQDGSAMERLLASRMSTG
ANVRADNPPAPVNKVVPQPLPKLRGITGGRATRPKSGRTNVLPDYFGDAEPQPPPAWHRAPVNGTGPRHA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=402, Percent_Identity=24.1293532338308, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 53876; Mature: 53745

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSIRRLESQGTLFMDFRYAGQRLREYTMLPDMPANRKRLQKALDRIETDIALGTFDYEK
CCCHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEECCCHHH
TFGKPLPQPEPKTKDGSVDRTARSDGLPVLSRNGTPLFGEFAQQWFTEVEVSWRRSYRIT
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEC
QKGALDKYLLPFFGDKEVGHITKADVLAFRASLAKVTTRKSQGTLSNRRVNAVMKPLRQI
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LNEAADRFEFNSAFRNIKPLKMKRSDVQPFTLDEVELILNTVRVDYRNYFNVRFFTGMRT
HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCC
GEAHGLKWKYVDFERRLILVRESIVLNEEDELKTDGSVRDIHMSQVVYDALKAQYQAAGE
CCCCCCEEEEECHHHHEEEEEHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
FSEYVFCSRSGQPINNQNFLNRVWNPLLRHLGLEHRRAYQMRHTAATLWLASGEAPEWIA
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCHHHHH
RQLGHTSTEMLFRVYSRYVPNLTRQDGSAMERLLASRMSTGANVRADNPPAPVNKVVPQP
HHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCC
LPKLRGITGGRATRPKSGRTNVLPDYFGDAEPQPPPAWHRAPVNGTGPRHA
CHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSIRRLESQGTLFMDFRYAGQRLREYTMLPDMPANRKRLQKALDRIETDIALGTFDYEK
CCHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEECCCHHH
TFGKPLPQPEPKTKDGSVDRTARSDGLPVLSRNGTPLFGEFAQQWFTEVEVSWRRSYRIT
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEC
QKGALDKYLLPFFGDKEVGHITKADVLAFRASLAKVTTRKSQGTLSNRRVNAVMKPLRQI
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LNEAADRFEFNSAFRNIKPLKMKRSDVQPFTLDEVELILNTVRVDYRNYFNVRFFTGMRT
HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCC
GEAHGLKWKYVDFERRLILVRESIVLNEEDELKTDGSVRDIHMSQVVYDALKAQYQAAGE
CCCCCCEEEEECHHHHEEEEEHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
FSEYVFCSRSGQPINNQNFLNRVWNPLLRHLGLEHRRAYQMRHTAATLWLASGEAPEWIA
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCHHHHH
RQLGHTSTEMLFRVYSRYVPNLTRQDGSAMERLLASRMSTGANVRADNPPAPVNKVVPQP
HHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCC
LPKLRGITGGRATRPKSGRTNVLPDYFGDAEPQPPPAWHRAPVNGTGPRHA
CHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]