| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yidY [C]
Identifier: 91786207
GI number: 91786207
Start: 310924
End: 312219
Strand: Direct
Name: yidY [C]
Synonym: Bpro_0296
Alternate gene names: 91786207
Gene position: 310924-312219 (Clockwise)
Preceding gene: 91786206
Following gene: 91786208
Centisome position: 5.98
GC content: 64.58
Gene sequence:
>1296_bases ATGACAAAGGCCCAGAACGCCTCGCCAGCGATGCCGGTGGCAACAGCTTGCCCGGCCTCGTCTCTCCCGCTGGACAGGAA AACCGCCGCCATCGTGTTCCTGGCCTTTGCGGCTGCCTATTTCTGTTCTGCGCTGGTGCGGGCCATCACGGCCACGCTGT CGCCCGTGTTGAGTCAGGACTTTGCCCTGCAGGCACGTGACTTGGGGCTGCTGGGGGCGGGCTATTTCCTGGGGTTTGCG TCCACTCAGTTGCCGCTGGGAGCCTGGCTGGACCGCCATGGCCCCAAGCGGGTGATCCTGTGTTTCCTGAGCCTGGCCGT GCTGGGTTGCCTGGCGTTTTCGCTGGCGGGTACCTTTGCCTGGCTGCTTGCCGCCCGCGTGCTGGTGGGCATGGGCGTCA GCGCCTGTCTGATGGCCCCTCTGACGGGCTATCGCCGCTGGTTTGACGGGCCTGCCGTTTTGCGCGCCAATTCCTGGATG CTGATGACGGGCTCGCTCGGCATGCTGGCTTCCACCCTGCCGGTGCAATGGCTGATGCCGTTGACGGGCTGGCGTCCGCT GTTCTGGATTCTGGCGGCGATGATTTTGCTGTCGATGGGCGTGATCGCCTGGGTGGTGCCTGCATGGCAGAAGAATGCCG ACGCAACCCCCGGAGCTCCCGGGACGGCGGGCGCAGAGGCAAGCTACGCAATGGTCTGGCGCAGCCGGTATTTCCAGAAA ATGTCGCCGCTGGCTTTCTTCAATTACGGCGGCCTGGTGGCCGTGCAGACGCTGTGGGCCGGCCCGTGGATGGTCAAGGT GGCGGGCTATACCCCGCTGGAAGCGGCCACCGGTCTTTTCTACATCAACGCCGCCATGCTGGTGACTTTCTGGGCCTGGG GCATGGTCAACCCCTGGCTGGTCGGACGAGGCTGGAGCGCCAACCGGCTGATCGGCTGGGGCGTGCCCGTCAGCCTGCTG GTGCTGGCCGCCAACATCTTCGCCGGCAGCGCCACCGGGTGGCTGGGCTGGGCTCTTTTTTGCATGAGTTCCAGCGCCCT GGGCCTGGCCCAGCCGGCGGTGGGCATGGCGTTCAGCCCTTCACTGGCCGGGCGCGCCATGTCGGCCTACAACCTGATGA TCTTTGGCGGCGTGTTTGTGGTGCAATGGGGCATTGGGCTGGCTGTCGACGCATTCAGGGCCGCCGGGCTGACCGAAGTG GCCAGCTTTCAGGCGGCCATGGGCGTGTTTTTATGTTGCTGTATCGCCTCATATGGGTATTTCCTCAGTGTGAACGCTGA TAATTCACCGCAATGA
Upstream 100 bases:
>100_bases AAATCCGACACACGCCCCAAACACGCATCCCCACGCGCACATTCCTAAACACAAGTCCATAAGATAAAGACGTAAAGATG CGGACGAGACCCCCTGCTTT
Downstream 100 bases:
>100_bases ACGGCATTTTCATCATCGCCCATGCCCCGCTGGCTTCCGCCCTGCGCCACTGCATGCTGCATGTGTTTCCCGACAACGCA GCGGGCGTTGCGGCGCTGGA
Product: major facilitator transporter
Products: Proton [Cytoplasm]; drug [Periplasm] [C]
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Transporter MFS Superfamily; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MTKAQNASPAMPVATACPASSLPLDRKTAAIVFLAFAAAYFCSALVRAITATLSPVLSQDFALQARDLGLLGAGYFLGFA STQLPLGAWLDRHGPKRVILCFLSLAVLGCLAFSLAGTFAWLLAARVLVGMGVSACLMAPLTGYRRWFDGPAVLRANSWM LMTGSLGMLASTLPVQWLMPLTGWRPLFWILAAMILLSMGVIAWVVPAWQKNADATPGAPGTAGAEASYAMVWRSRYFQK MSPLAFFNYGGLVAVQTLWAGPWMVKVAGYTPLEAATGLFYINAAMLVTFWAWGMVNPWLVGRGWSANRLIGWGVPVSLL VLAANIFAGSATGWLGWALFCMSSSALGLAQPAVGMAFSPSLAGRAMSAYNLMIFGGVFVVQWGIGLAVDAFRAAGLTEV ASFQAAMGVFLCCCIASYGYFLSVNADNSPQ
Sequences:
>Translated_431_residues MTKAQNASPAMPVATACPASSLPLDRKTAAIVFLAFAAAYFCSALVRAITATLSPVLSQDFALQARDLGLLGAGYFLGFA STQLPLGAWLDRHGPKRVILCFLSLAVLGCLAFSLAGTFAWLLAARVLVGMGVSACLMAPLTGYRRWFDGPAVLRANSWM LMTGSLGMLASTLPVQWLMPLTGWRPLFWILAAMILLSMGVIAWVVPAWQKNADATPGAPGTAGAEASYAMVWRSRYFQK MSPLAFFNYGGLVAVQTLWAGPWMVKVAGYTPLEAATGLFYINAAMLVTFWAWGMVNPWLVGRGWSANRLIGWGVPVSLL VLAANIFAGSATGWLGWALFCMSSSALGLAQPAVGMAFSPSLAGRAMSAYNLMIFGGVFVVQWGIGLAVDAFRAAGLTEV ASFQAAMGVFLCCCIASYGYFLSVNADNSPQ >Mature_430_residues TKAQNASPAMPVATACPASSLPLDRKTAAIVFLAFAAAYFCSALVRAITATLSPVLSQDFALQARDLGLLGAGYFLGFAS TQLPLGAWLDRHGPKRVILCFLSLAVLGCLAFSLAGTFAWLLAARVLVGMGVSACLMAPLTGYRRWFDGPAVLRANSWML MTGSLGMLASTLPVQWLMPLTGWRPLFWILAAMILLSMGVIAWVVPAWQKNADATPGAPGTAGAEASYAMVWRSRYFQKM SPLAFFNYGGLVAVQTLWAGPWMVKVAGYTPLEAATGLFYINAAMLVTFWAWGMVNPWLVGRGWSANRLIGWGVPVSLLV LAANIFAGSATGWLGWALFCMSSSALGLAQPAVGMAFSPSLAGRAMSAYNLMIFGGVFVVQWGIGLAVDAFRAAGLTEVA SFQAAMGVFLCCCIASYGYFLSVNADNSPQ
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45706; Mature: 45575
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAQNASPAMPVATACPASSLPLDRKTAAIVFLAFAAAYFCSALVRAITATLSPVLSQD CCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALQARDLGLLGAGYFLGFASTQLPLGAWLDRHGPKRVILCFLSLAVLGCLAFSLAGTFA HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WLLAARVLVGMGVSACLMAPLTGYRRWFDGPAVLRANSWMLMTGSLGMLASTLPVQWLMP HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCHHHHHHHCCHHHHHC LTGWRPLFWILAAMILLSMGVIAWVVPAWQKNADATPGAPGTAGAEASYAMVWRSRYFQK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MSPLAFFNYGGLVAVQTLWAGPWMVKVAGYTPLEAATGLFYINAAMLVTFWAWGMVNPWL CCCCEEECCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE VGRGWSANRLIGWGVPVSLLVLAANIFAGSATGWLGWALFCMSSSALGLAQPAVGMAFSP EECCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECC SLAGRAMSAYNLMIFGGVFVVQWGIGLAVDAFRAAGLTEVASFQAAMGVFLCCCIASYGY CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCE FLSVNADNSPQ EEEECCCCCCC >Mature Secondary Structure TKAQNASPAMPVATACPASSLPLDRKTAAIVFLAFAAAYFCSALVRAITATLSPVLSQD CCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALQARDLGLLGAGYFLGFASTQLPLGAWLDRHGPKRVILCFLSLAVLGCLAFSLAGTFA HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WLLAARVLVGMGVSACLMAPLTGYRRWFDGPAVLRANSWMLMTGSLGMLASTLPVQWLMP HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCHHHHHHHCCHHHHHC LTGWRPLFWILAAMILLSMGVIAWVVPAWQKNADATPGAPGTAGAEASYAMVWRSRYFQK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MSPLAFFNYGGLVAVQTLWAGPWMVKVAGYTPLEAATGLFYINAAMLVTFWAWGMVNPWL CCCCEEECCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE VGRGWSANRLIGWGVPVSLLVLAANIFAGSATGWLGWALFCMSSSALGLAQPAVGMAFSP EECCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECC SLAGRAMSAYNLMIFGGVFVVQWGIGLAVDAFRAAGLTEVASFQAAMGVFLCCCIASYGY CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCE FLSVNADNSPQ EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA