Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 91786192

GI number: 91786192

Start: 296375

End: 297649

Strand: Reverse

Name: yfdE [H]

Synonym: Bpro_0281

Alternate gene names: 91786192

Gene position: 297649-296375 (Counterclockwise)

Preceding gene: 91786200

Following gene: 91786190

Centisome position: 5.72

GC content: 65.88

Gene sequence:

>1275_bases
GTGTGGGCTCGTCAGCCTTCATCAAGGCAAAATAGCAGGATGAACTCACTTGACGGCATCCGCATTCTCGACCTTTCCCG
CGTGCTCGCGGGCCCCTGGTGTACCCAGACGCTGGCCGACCTGGGCGCCGACGTCATCAAGATCGAGCGTCCCGGCACCG
GCGACGACACGCGAACCTGGGGTCCGCCGTTTTTGAAGGACGACCAGGGCACAGAGACGCAGGAGGCCGCCTACTACCTG
GGCACCAACCGCAACAAGCGCTCGGTGACCTGCGACATTGCCCGGCCGGCCGGACAGGCGCTGATACGCGAACTGGCCGC
GCATTGCGACGTCTTCGTCGAGAACTTCAAGGTCGGCGACATGGCGCGCTACGGCCTGGACTATGCCTCGCTCAAGGCCA
TCAACCCGCGCCTGGTGTACTGCTCGGTCACCGGCTTTGGCCAGACCGGCCCCTATGCCGAGCGCGCCGGCTACGATTAC
GCCATCCAGGGCATGGGCGGCCTGATGAGCGTAACCGGCGAGCGCGATGACATCGGCGGCGGCCCGCAAAAGGTCGGCGT
GGCCGTGGCCGATTTGATGACCGGGATGTACGCCACGGTGGCCATCCTCGCCGCGCTCCGCCATGCCGAGAGAACCGGCG
AAGGCCAGCAGGTCGACATGGCGCTGCTCGACACCCAGGTAGCCATGCTGGCCAACCTGAGCGCCAACTACCTGGTGAGC
GGCAAGGCGCCGGGCCGCGCCGGCAATGCGCACCAGAACATCGTGCCCTACCAGGTGTTTGAGGTGGCGCCGGCTGCCGA
CGGCCACAAGGATCACCTGATTTTGGCCGTGGGCAACGATGGCCAGTACGCCAAGTTTTGCGCGGTGGCGGGTCACCCCG
AACTGGCCAGTGACCCGCGCTACGCCAAAAACCAGGACCGCGTGCGCAACCGGGCGGTGCTGGTGCCGTTGCTGGAGGCC
ATCCTGAAAACACGCACCAAGGCCGACTGGCTGGCTGCGCTGGAAGCCGCCAAGGTGCCCTGCGGCGCCATCAACAACCT
GGCCGAGGTGTTTGCCGACCCGCAGATCGAGGCGCGCCAGATGGTCACGCACTGGCAACACCCCGTCAAACAAGACCTGC
GGCTGGTGTCCAGCCCCATCAAGCTCAGCGCGACGCCGGTGCGTTGCGACCTGCCGCCGCCGCTGCTGGGCCAGCACACG
GAAGACGTGCTACGCGGTATGCTGAACTACTCGGACGCCCAACTGTCCGACCTGAAAAACAAGCAGGTGATCTGA

Upstream 100 bases:

>100_bases
CAACCTTCTCCCAAAGGGAGAAGGAGTAACAGCCAAAAAGCGCTTCCTCCGTTGAACTGAGCAGGCGACTTTCTCCCTCT
CCCGCTGGGAGAGGGTTTGG

Downstream 100 bases:

>100_bases
CAGGGGGCTGGTGTCTGGCAGCAGCTGACGGAGCTTGCCGCCATGAAAAAAGCCCTGCCGCGCGGCTGCGCGGCAGGGCT
TGATATCCAGAAAAACCCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MWARQPSSRQNSRMNSLDGIRILDLSRVLAGPWCTQTLADLGADVIKIERPGTGDDTRTWGPPFLKDDQGTETQEAAYYL
GTNRNKRSVTCDIARPAGQALIRELAAHCDVFVENFKVGDMARYGLDYASLKAINPRLVYCSVTGFGQTGPYAERAGYDY
AIQGMGGLMSVTGERDDIGGGPQKVGVAVADLMTGMYATVAILAALRHAERTGEGQQVDMALLDTQVAMLANLSANYLVS
GKAPGRAGNAHQNIVPYQVFEVAPAADGHKDHLILAVGNDGQYAKFCAVAGHPELASDPRYAKNQDRVRNRAVLVPLLEA
ILKTRTKADWLAALEAAKVPCGAINNLAEVFADPQIEARQMVTHWQHPVKQDLRLVSSPIKLSATPVRCDLPPPLLGQHT
EDVLRGMLNYSDAQLSDLKNKQVI

Sequences:

>Translated_424_residues
MWARQPSSRQNSRMNSLDGIRILDLSRVLAGPWCTQTLADLGADVIKIERPGTGDDTRTWGPPFLKDDQGTETQEAAYYL
GTNRNKRSVTCDIARPAGQALIRELAAHCDVFVENFKVGDMARYGLDYASLKAINPRLVYCSVTGFGQTGPYAERAGYDY
AIQGMGGLMSVTGERDDIGGGPQKVGVAVADLMTGMYATVAILAALRHAERTGEGQQVDMALLDTQVAMLANLSANYLVS
GKAPGRAGNAHQNIVPYQVFEVAPAADGHKDHLILAVGNDGQYAKFCAVAGHPELASDPRYAKNQDRVRNRAVLVPLLEA
ILKTRTKADWLAALEAAKVPCGAINNLAEVFADPQIEARQMVTHWQHPVKQDLRLVSSPIKLSATPVRCDLPPPLLGQHT
EDVLRGMLNYSDAQLSDLKNKQVI
>Mature_424_residues
MWARQPSSRQNSRMNSLDGIRILDLSRVLAGPWCTQTLADLGADVIKIERPGTGDDTRTWGPPFLKDDQGTETQEAAYYL
GTNRNKRSVTCDIARPAGQALIRELAAHCDVFVENFKVGDMARYGLDYASLKAINPRLVYCSVTGFGQTGPYAERAGYDY
AIQGMGGLMSVTGERDDIGGGPQKVGVAVADLMTGMYATVAILAALRHAERTGEGQQVDMALLDTQVAMLANLSANYLVS
GKAPGRAGNAHQNIVPYQVFEVAPAADGHKDHLILAVGNDGQYAKFCAVAGHPELASDPRYAKNQDRVRNRAVLVPLLEA
ILKTRTKADWLAALEAAKVPCGAINNLAEVFADPQIEARQMVTHWQHPVKQDLRLVSSPIKLSATPVRCDLPPPLLGQHT
EDVLRGMLNYSDAQLSDLKNKQVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=424, Percent_Identity=43.1603773584906, Blast_Score=360, Evalue=1e-99,
Organism=Homo sapiens, GI300863124, Length=450, Percent_Identity=40.6666666666667, Blast_Score=346, Evalue=2e-95,
Organism=Homo sapiens, GI300863126, Length=424, Percent_Identity=37.9716981132075, Blast_Score=304, Evalue=1e-82,
Organism=Homo sapiens, GI13376042, Length=450, Percent_Identity=36.6666666666667, Blast_Score=292, Evalue=4e-79,
Organism=Homo sapiens, GI266456254, Length=412, Percent_Identity=25.7281553398058, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI42794625, Length=412, Percent_Identity=25.7281553398058, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI266458393, Length=210, Percent_Identity=31.4285714285714, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI266458397, Length=210, Percent_Identity=31.4285714285714, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=32.5153374233129, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=33.5526315789474, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI87082093, Length=394, Percent_Identity=34.5177664974619, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1788717, Length=432, Percent_Identity=31.4814814814815, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786222, Length=420, Percent_Identity=25, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=227, Percent_Identity=24.6696035242291, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115535051, Length=223, Percent_Identity=25.5605381165919, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648431, Length=408, Percent_Identity=46.8137254901961, Blast_Score=365, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24585488, Length=328, Percent_Identity=29.2682926829268, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45972; Mature: 45972

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWARQPSSRQNSRMNSLDGIRILDLSRVLAGPWCTQTLADLGADVIKIERPGTGDDTRTW
CCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC
GPPFLKDDQGTETQEAAYYLGTNRNKRSVTCDIARPAGQALIRELAAHCDVFVENFKVGD
CCCCCCCCCCCCHHHHEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCH
MARYGLDYASLKAINPRLVYCSVTGFGQTGPYAERAGYDYAIQGMGGLMSVTGERDDIGG
HHHHCCCHHHHEECCCEEEEEEECCCCCCCCCHHHCCCCEEECCCCCEEEECCCCCCCCC
GPQKVGVAVADLMTGMYATVAILAALRHAERTGEGQQVDMALLDTQVAMLANLSANYLVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEEE
GKAPGRAGNAHQNIVPYQVFEVAPAADGHKDHLILAVGNDGQYAKFCAVAGHPELASDPR
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
YAKNQDRVRNRAVLVPLLEAILKTRTKADWLAALEAAKVPCGAINNLAEVFADPQIEARQ
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
MVTHWQHPVKQDLRLVSSPIKLSATPVRCDLPPPLLGQHTEDVLRGMLNYSDAQLSDLKN
HHHHHCCHHHHHHHHHCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
KQVI
CCCC
>Mature Secondary Structure
MWARQPSSRQNSRMNSLDGIRILDLSRVLAGPWCTQTLADLGADVIKIERPGTGDDTRTW
CCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC
GPPFLKDDQGTETQEAAYYLGTNRNKRSVTCDIARPAGQALIRELAAHCDVFVENFKVGD
CCCCCCCCCCCCHHHHEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCH
MARYGLDYASLKAINPRLVYCSVTGFGQTGPYAERAGYDYAIQGMGGLMSVTGERDDIGG
HHHHCCCHHHHEECCCEEEEEEECCCCCCCCCHHHCCCCEEECCCCCEEEECCCCCCCCC
GPQKVGVAVADLMTGMYATVAILAALRHAERTGEGQQVDMALLDTQVAMLANLSANYLVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEEE
GKAPGRAGNAHQNIVPYQVFEVAPAADGHKDHLILAVGNDGQYAKFCAVAGHPELASDPR
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
YAKNQDRVRNRAVLVPLLEAILKTRTKADWLAALEAAKVPCGAINNLAEVFADPQIEARQ
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
MVTHWQHPVKQDLRLVSSPIKLSATPVRCDLPPPLLGQHTEDVLRGMLNYSDAQLSDLKN
HHHHHCCHHHHHHHHHCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHCCC
KQVI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]