| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91786122
Identifier: 91786122
GI number: 91786122
Start: 229234
End: 230439
Strand: Direct
Name: 91786122
Synonym: Bpro_0211
Alternate gene names: NA
Gene position: 229234-230439 (Clockwise)
Preceding gene: 91786121
Following gene: 91786123
Centisome position: 4.41
GC content: 67.74
Gene sequence:
>1206_bases ATGAGTTCATCTTCGCCCTTGCCGCTGCGCCCTGAAGCCCGACCCGCCAAGGAGGGGGTGCCCACCGTCTTCGGCCGGAC TTGGCTGGCTTTGCGGCCCGCCCGCCCCGGCATCAGCCTGCGCGAGTGCCTGCGCCTGGTCATTGGCGCACTCGTCGGCA TTTTTCTGACGGCGCTGCTGTGCCGGCTGGCGGGCGCCACGTCAGCGCTGCCCTGGCTGGTGGCGCCGCTGGGAGCCAGT GCGGTGCTGGTATTTGCCATGCCGGCCGGTCCGATGGCGCAGCCCTGGGCGGTGGTGGGGGGCAACACCCTGTCGGCACT GGTGGGCATTGCCGGCGTGCATGGCGTGCACTTGCTGGGCTCACCCGAGCTGGCTGCGGCGCTGGCGGTGGCCACCGCCA TTGCCGCGATGCTTGCGCTGCGCTGCCTGCATCCACCGGGGGGGGCCACCGCGCTGATGATGGTGCTGGGCGGCATTGGC GATCCGTCTTTCGCCCTGTATCCGGTCCTGCTCAATTCCCTGTTGCTGGTGCTGGCCGGCATGGCCTACAACCATGCCAC CGGCAAGCCGTATCCGCACAGGCAGCTCCCCCCTGCCGGGGCTTCCGGTGCGGCCCGGGCCGTTGATTCAGATCTGGATG CCGATCTGGATGCGGTGCTGGCACGCTACAACCAGGTGCTGGACGTCAGCCGGGACGACCTCAAATCGCTGCTGGCCGAG ACCCAGCTGCGCGCCTACGATCGCAAGCTGGCGGAATTGCGCTGCGCGGATGTCATGTCGCGCGAGCTGGTGACCGTGCA GTTCGGTACCCCGCTTCAGGAGGCCTGGGCCCTGTTGAGGAGCCGCCGCATCAAGGCACTGCCGGTGGTAGACCGCGCCT TCCGCATCGCGGGCATCATCACGGTGGCTGATTTCATGCGGGCCGCCGAACTCGACGTCTATGAGGGGTTCGAGGACAAG TTGCGAACGCTGGTCCGTACCACTCGCAGTGTTTACGCCAGCAAGCCGGAAGTGGTGGGCCAGATCATGACGCGCAATGT GAGGGTGGCCGGCATGCAGCGCCGCCTGCTGGACCTGATACCGCTCTTCGGCAGCACCGGCCATCACCACATCCCGATTC TTGGGGAGGGCGAGCGGCTGGTGGGCATGATCACGCAGTCTGACCTGGTCGCTGCCCTGGGGCGGGCTGCCGATCCGACG GTTTGA
Upstream 100 bases:
>100_bases CTGTGGCTTGCCGGCTCGCAGCGCAGAGACTCGATGTTCCGCGCGCAGCCTTTGCAGCCGCGCACCCGCCTTCATCATTT CCCGTGAATGTGCGTCCCTC
Downstream 100 bases:
>100_bases TCCCGCCATGCGCAGTCTGCACGACCGGCTTTCCCGCGTGACGGGGTTCCTCGCGTTCAGGGGGCAGCAGCGCGGCGATT GCCGCGAGTCCCAGCCAGGA
Product: CBS domain-containing protein
Products: NA
Alternate protein names: CBS Domain Containing Membrane Protein; HPP Family Protein; HPP Family Protein+B; Cbs Domain Containing Membrane Protein; CBS Domain-Containing Membrane Protein; CbsHpp; HPP Domain-Containing Protein; HPP Family/CBS Domain-Containing Protein; HPP Domain And CBS Domain Pair-Containing Protein; Transmembrane Protein; Tryptophan Synthase Alpha Chain; CBS Domain Pair Family; CBS-Domain-Containing Membrane Protein; Signal Transduction Protein; Conserved Protein
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MSSSSPLPLRPEARPAKEGVPTVFGRTWLALRPARPGISLRECLRLVIGALVGIFLTALLCRLAGATSALPWLVAPLGAS AVLVFAMPAGPMAQPWAVVGGNTLSALVGIAGVHGVHLLGSPELAAALAVATAIAAMLALRCLHPPGGATALMMVLGGIG DPSFALYPVLLNSLLLVLAGMAYNHATGKPYPHRQLPPAGASGAARAVDSDLDADLDAVLARYNQVLDVSRDDLKSLLAE TQLRAYDRKLAELRCADVMSRELVTVQFGTPLQEAWALLRSRRIKALPVVDRAFRIAGIITVADFMRAAELDVYEGFEDK LRTLVRTTRSVYASKPEVVGQIMTRNVRVAGMQRRLLDLIPLFGSTGHHHIPILGEGERLVGMITQSDLVAALGRAADPT V
Sequences:
>Translated_401_residues MSSSSPLPLRPEARPAKEGVPTVFGRTWLALRPARPGISLRECLRLVIGALVGIFLTALLCRLAGATSALPWLVAPLGAS AVLVFAMPAGPMAQPWAVVGGNTLSALVGIAGVHGVHLLGSPELAAALAVATAIAAMLALRCLHPPGGATALMMVLGGIG DPSFALYPVLLNSLLLVLAGMAYNHATGKPYPHRQLPPAGASGAARAVDSDLDADLDAVLARYNQVLDVSRDDLKSLLAE TQLRAYDRKLAELRCADVMSRELVTVQFGTPLQEAWALLRSRRIKALPVVDRAFRIAGIITVADFMRAAELDVYEGFEDK LRTLVRTTRSVYASKPEVVGQIMTRNVRVAGMQRRLLDLIPLFGSTGHHHIPILGEGERLVGMITQSDLVAALGRAADPT V >Mature_400_residues SSSSPLPLRPEARPAKEGVPTVFGRTWLALRPARPGISLRECLRLVIGALVGIFLTALLCRLAGATSALPWLVAPLGASA VLVFAMPAGPMAQPWAVVGGNTLSALVGIAGVHGVHLLGSPELAAALAVATAIAAMLALRCLHPPGGATALMMVLGGIGD PSFALYPVLLNSLLLVLAGMAYNHATGKPYPHRQLPPAGASGAARAVDSDLDADLDAVLARYNQVLDVSRDDLKSLLAET QLRAYDRKLAELRCADVMSRELVTVQFGTPLQEAWALLRSRRIKALPVVDRAFRIAGIITVADFMRAAELDVYEGFEDKL RTLVRTTRSVYASKPEVVGQIMTRNVRVAGMQRRLLDLIPLFGSTGHHHIPILGEGERLVGMITQSDLVAALGRAADPTV
Specific function: Unknown
COG id: COG3448
COG function: function code T; CBS-domain-containing membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42487; Mature: 42355
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSSPLPLRPEARPAKEGVPTVFGRTWLALRPARPGISLRECLRLVIGALVGIFLTALL CCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH CRLAGATSALPWLVAPLGASAVLVFAMPAGPMAQPWAVVGGNTLSALVGIAGVHGVHLLG HHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCEEEEC SPELAAALAVATAIAAMLALRCLHPPGGATALMMVLGGIGDPSFALYPVLLNSLLLVLAG CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH MAYNHATGKPYPHRQLPPAGASGAARAVDSDLDADLDAVLARYNQVLDVSRDDLKSLLAE HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH TQLRAYDRKLAELRCADVMSRELVTVQFGTPLQEAWALLRSRRIKALPVVDRAFRIAGII HHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH TVADFMRAAELDVYEGFEDKLRTLVRTTRSVYASKPEVVGQIMTRNVRVAGMQRRLLDLI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHH PLFGSTGHHHIPILGEGERLVGMITQSDLVAALGRAADPTV HHHCCCCCCCCCEEECCCCEEEEHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SSSSPLPLRPEARPAKEGVPTVFGRTWLALRPARPGISLRECLRLVIGALVGIFLTALL CCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH CRLAGATSALPWLVAPLGASAVLVFAMPAGPMAQPWAVVGGNTLSALVGIAGVHGVHLLG HHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCEEEEC SPELAAALAVATAIAAMLALRCLHPPGGATALMMVLGGIGDPSFALYPVLLNSLLLVLAG CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH MAYNHATGKPYPHRQLPPAGASGAARAVDSDLDADLDAVLARYNQVLDVSRDDLKSLLAE HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH TQLRAYDRKLAELRCADVMSRELVTVQFGTPLQEAWALLRSRRIKALPVVDRAFRIAGII HHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH TVADFMRAAELDVYEGFEDKLRTLVRTTRSVYASKPEVVGQIMTRNVRVAGMQRRLLDLI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHH PLFGSTGHHHIPILGEGERLVGMITQSDLVAALGRAADPTV HHHCCCCCCCCCEEECCCCEEEEHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA