| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91785945
Identifier: 91785945
GI number: 91785945
Start: 33048
End: 34334
Strand: Reverse
Name: 91785945
Synonym: Bpro_0032
Alternate gene names: NA
Gene position: 34334-33048 (Counterclockwise)
Preceding gene: 91785946
Following gene: 91785944
Centisome position: 0.66
GC content: 69.62
Gene sequence:
>1287_bases ATGAATGCCGACCGCTTTGAAGCCACCTACCTGATCGAGACCCCGCTCGAGCCCGCCCGGGTTGCCGAGGTGATGGCCGG CGAGCAGTCCTGCGGCACCTTCACCCGCGTCGAGGGCGAAACCGATGCGCTGCGCCTGCGCGCCCGTGCCACGGTGGAGT CGATCGAGGAACTGGCATCGGTGAACGCGCCCAGCCTGCCCAATGCCCTGCTCGAACGCCAGGGCCATACCGCACCCCAT GGCGGCCCGTGGCGCCGTGCCCGCGTGCGCATCTCTTTTCCGGTGGCCAACGTCGGCGCCAACCTGCCGACGCTGGCCGC CACCGTGTCCGGCAACCTCTATGACTTGGGCGAGGCCAGTGGTCTGCGGCTGGAGAGCATGAAGCTGCCCGCCGCCTACC GCGCGCAGTTCGACCGGCCCAGGGTCGGCATCGCCGGCACGCGCCAGGCCACCGGCGTGGCCAGCGGCGCGCTGGTGGGC ACCATCCTCAAGCCCAATGTCGGTTTTTCCGCAGCGCAGACCGCCGAACTGGTGGGAAGGCTGTGCGCAGCAGGCGTGGA CTTCATCAAGGACGACGAGGTCTGCGCCGACCCGGCCCATGCCCCGCTGGCAAAACGGGTGCCCGCCGTGATGGCCGTGG TACGCGCGCACCAGCAGCGCACCGGCAAGCACGTGATGGTGGCCTTCAACATCACCGACGAAACCGATGCGATGAAGCGC CACGCCGACCTGGTCGAGCGCGAAGGCGGCTCCTGCGTCATGGCCAGCCTCAACTGGTGCGGCCATTCGGCCCTGCAGAC GCTGCGCCGCCACACAGGGCTGGCGCTGCACGGCCACCGCAACGGTTACGGCGCGCTGTCGCGGCACCCGCTGCTGGGCA TGTCCTTCCAGGCCTACCAGACCCTGTGGCGGCTGGCCGGCGTGGACCACATGCATGTACACGGCCTGCAGGGCAAGTTT TCGCAACCCGATGCAGAGGTCATCGAATCAGCGCACGACTGCTACACGCCACTGGCCGACGGTGCCGATGGTTTTGACGA CCGCGTCATGCCGGCCTTCTCGTCGGGCCAATGGGCCGGCACGGTGCCGGCGACCTGGGCCGCCGTGCAAAGCGATGACC TGCTGTTCATGTCGGGCGGCGGCATCCTGGCGCACCCGGGCGGTCCGGCGGCCGGTGTCGCCAGCATCCGTCAGGCCTGG GCGGCCGCACGCCAGGGTGTTGCGCTGGCCGAGTTTGCGCGCGAGGCGCCCGAGCTGGCTGCCGCGCTCGCCTTCTTCGG CAAATAA
Upstream 100 bases:
>100_bases GCCGGATGTTCGACCTGATCCGCGCCTCGTCCGAGGGCTGGGATGGCCGCGAGCCGGTGCGCCCCTTTCCCGACCTGAGC AAACTCTGAAGCGCGCCGAC
Downstream 100 bases:
>100_bases GCATGCAGGCGAGCCATAAAGACAGCACGCTGAAGATCGCCTACTACGGCGATGACTTCACGGGCGCCACCGACACGCTC GCCACCGCCGCGCGCGCCGG
Product: RuBisCo-like protein
Products: 3-phospho-D-glycerate; H+
Alternate protein names: RuBisCO-like protein [H]
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW AAARQGVALAEFAREAPELAAALAFFGK
Sequences:
>Translated_428_residues MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW AAARQGVALAEFAREAPELAAALAFFGK >Mature_428_residues MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW AAARQGVALAEFAREAPELAAALAFFGK
Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]
COG id: COG1850
COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020878 - InterPro: IPR000685 - InterPro: IPR017443 [H]
Pfam domain/function: PF00016 RuBisCO_large [H]
EC number: 4.1.1.39
Molecular weight: Translated: 45345; Mature: 45345
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS00157 RUBISCO_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELAS CCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH VNAPSLPNALLERQGHTAPHGGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEAS CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEEEEECCCEEECCCCC GLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVGTILKPNVGFSAAQTAELVGR CCEEEHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH LCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQ HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHH TLWRLAGVDHMHVHGLQGKFSQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAG HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC TVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAWAAARQGVALAEFAREAPELA CCCCCEEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AALAFFGK HHHHHHCC >Mature Secondary Structure MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELAS CCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH VNAPSLPNALLERQGHTAPHGGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEAS CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEEEEECCCEEECCCCC GLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVGTILKPNVGFSAAQTAELVGR CCEEEHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH LCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQ HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHH TLWRLAGVDHMHVHGLQGKFSQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAG HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC TVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAWAAARQGVALAEFAREAPELA CCCCCEEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AALAFFGK HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O
Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]