Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 91214099

GI number: 91214099

Start: 5043297

End: 5044520

Strand: Direct

Name: deoB [H]

Synonym: UTI89_C5154

Alternate gene names: 91214099

Gene position: 5043297-5044520 (Clockwise)

Preceding gene: 162138298

Following gene: 162138297

Centisome position: 99.56

GC content: 54.0

Gene sequence:

>1224_bases
ATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGG
GGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGCTGACCACGGTCGTAAAGGCCCGCTCAATCTGC
CAAATCTGACCCGTCTTGGGCTGGCGAAAGCACACGAAGGTTCTACCGGTTTCATTCCGGCGGGAATGGATGGCAACGCT
GAAGTTATCGGCGCGTACGCATGGGCGCACGAAATGTCATCCGGTAAAGACACCCCGTCTGGTCACTGGGAAATCGCCGG
TGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTTG
AACGCGCTAATCTGCCGGGTTACCTCGGTAACTGCCACTCTTCCGGTACGGTCATTCTGGATCAACTGGGCGAAGAGCAC
ATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATGAAGAAACTTTCGGTCT
GGACAAACTCTACGAACTGTGCGAAATCGCTCGTGAAGAGCTGACCAACGGCGGCTACAACATCGGTCGTGTTATCGCTC
GTCCGTTTATCGGCGACAAAGCTGGTAACTTCCAGCGTACTGGTAACCGTCACGACCTGGCTGTTGAGCCGCCAGCACCG
ACCGTGCTGCAGAAACTGGTTGATGAAAAACACGGCCAGGTGGTTTCGGTCGGTAAAATTGCAGACATCTACGCCAACTG
CGGTATCACCAAAAAAGTGAAAGCGACCGGCCTGGACGCGCTGTTTGACGCCACCATCAAAGAGATGAAAGAAGCGGGTG
ATAACACCATCGTCTTCACCAACTTCGTTGACTTCGACTCTTCCTGGGGCCACCGTCGCGACGTCGCCGGTTATGCTGCG
GGTCTGGAACTGTTCGACCGCCGTCTGCCGGAGCTGATGTCTTTGCTGCGCGATGACGATATTCTGATTCTCACTGCTGA
CCACGGTTGTGACCCGACCTGGACCGGTACTGACCACACGCGTGAACACATTCCGGTACTGGTTTACGGCCCGAAAGTGA
AACCAGGTTCGCTGGGTCATCGTGAAACCTTCGCGGATATCGGCCAGACTCTGGCAAAATATTTTGGTACTTCTGATATG
GAATATGGCAAAGCCATGTTCTGA

Upstream 100 bases:

>100_bases
TAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAA
GCACTGAGTACGGAGAACAT

Downstream 100 bases:

>100_bases
TGGATTTGGGCGGAGCAGTGACTCCGCCTTTAATATGTCACAAAAAGGATAAAATGATGGCTACTCCACACATTAATGCA
GAAATGGGCGATTTTGCTGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF

Sequences:

>Translated_407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF
>Mature_407_residues
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNA
EVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAA
GLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDM
EYGKAMF

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=99.7542997542998, Blast_Score=839, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=442, Percent_Identity=28.9592760180996, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44393; Mature: 44393

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH
CHHCCCCCCCEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT
HHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLG
CCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH
CHHCCCCCCCEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCC
ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT
HHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCEEEEE
NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA