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The map label for this gene is intB [H]

Identifier: 91213826

GI number: 91213826

Start: 4778383

End: 4779645

Strand: Direct

Name: intB [H]

Synonym: UTI89_C4878

Alternate gene names: 91213826

Gene position: 4778383-4779645 (Clockwise)

Preceding gene: 91213824

Following gene: 91213828

Centisome position: 94.33

GC content: 45.92

Gene sequence:

>1263_bases
ATGGCATTAACAGATCTCAAAGTCAGAACAGCCAAGCCAGCGGATAAGCAATATAAGCTGACTGATGGTGGCGGTATGCA
TCTGCTTGTCCATCCAAATGGTTCTAAGTACTGGCGTTTGCAGTACCGTTATGAGGGAAAGCAAAAGATGCTAGCACTTG
GGGTTTATCCTGAAATCACACTAGCGGATGCTAGAGTACGTCGTGACGAGGCGCGTAAGCTGCTTGCGAATGGCGTCGCT
CCGGGAGATAAAAAGAAAAATGATAAGGTTGAACAGAGTAAAGCACGGACCTTTAAAGAAGTCGCGATCGAGTGGTATGG
CACCAATAAAAAGTGGTCAGAAGATCATGCCCATCGTGTGCTAAAAAGTCTGGAAGATAATCTTTTTGCAGCGCTTGGTG
AACGTAATATTGCTGAGTTAAAAACTCGAGATTTATTAGCACCTATTAAAGCCGTGGAGATGTCTGGACGTCTTGAGGTG
GCTGCTCGTCTTCAACAGCGTACTACAGCCATCATGCGCTATGCAGTGCAAAGTGGGTTAATTGATTATAACCCGGCACA
AGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCCGCGCTTGAATTAAAGCGCATCCCTGAGTTGCTTA
CAAAAATAGATAGCTATACTGGTAGGCCGCTAACCCGATGGGCGACAGAACTTACTTTGCTGATCTTTATTCGGTCCAGT
GAGCTGCGTTTTGCTCGTTGGTCAGAGATCGATTTCGAAGCGTCTATATGGACTATCCCACCGGAGCGGGAGCCTATTCC
TGGAGTGAAACATTCCCATAGAGGCTCAAAAATGCGTACAACGCATCTAGTGCCTCTTTCAAGGCAAGCCCTTGCAATTT
TAAAGCAGATAAAACAGTTTTGTGGGGCTCATGACTTGATATTTATTGGTGATCACGATTCGCACAAGCCCATGAGTGAG
AATACAGTAAATAGTGCGTTACGGGTCATGGGGTATGATACAAAAGTTGAGGTCTGTGGTCATGGTTTCCGAACAATGGC
CTGTAGTTCATTGATCGAATCAGGTTTGTGGTCTCGTGATGCTGTTGAACGTCAGATGAGTCACATGGAGCGAAATTCAG
TGAGGGCTGCGTATATCCATAAAGCAGAACATCTGGAAGAACGTCGACTGATGCTACAGTGGTGGGCTGATTTTCTGGAT
GCGAACCGGGAGAAGGGTATCAGTCCGTTTGACTATGCAAAAATTAACAATCCATTAAAATAG

Upstream 100 bases:

>100_bases
CAAGGTCAACTGATATCAACGTACATCTACCAACACATGTTGGTACAGATGATGGTATTTCCGGTTCGATAATGCTTGTA
CCAACAGGGAGGGAATACGC

Downstream 100 bases:

>100_bases
TAAGCAGTCCGGGCTGATTGCCCGGACTGCTTTAACTGATTATTTTTCTTTGTAAATGATGACGAAGATTGATGTTCTGA
CAAGTTACTCCGGCGTCCAT

Product: prophage P4 integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVA
PGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEV
AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQFCGAHDLIFIGDHDSHKPMSE
NTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD
ANREKGISPFDYAKINNPLK

Sequences:

>Translated_420_residues
MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVA
PGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEV
AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQFCGAHDLIFIGDHDSHKPMSE
NTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD
ANREKGISPFDYAKINNPLK
>Mature_419_residues
ALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVAP
GDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVA
ARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSSE
LRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQFCGAHDLIFIGDHDSHKPMSEN
TVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA
NREKGISPFDYAKINNPLK

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=418, Percent_Identity=35.4066985645933, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=35.3960396039604, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1788690, Length=404, Percent_Identity=33.1683168316832, Blast_Score=221, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47992; Mature: 47861

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT
CCCCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCEE
LADARVRRDEARKLLANGVAPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV
EHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHH
LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEEECC
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF
CCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD
CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCHH
AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
ALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT
CCCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCEE
LADARVRRDEARKLLANGVAPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV
EHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHH
LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEEECC
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF
CCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD
CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCHH
AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]