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The map label for this gene is rbsD [H]

Identifier: 91213275

GI number: 91213275

Start: 4194207

End: 4194638

Strand: Direct

Name: rbsD [H]

Synonym: UTI89_C4303

Alternate gene names: 91213275

Gene position: 4194207-4194638 (Clockwise)

Preceding gene: 91213274

Following gene: 91213276

Centisome position: 82.8

GC content: 46.3

Gene sequence:

>432_bases
ATGGAGAAAAAAATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGACTGGGACATACCGATAC
GCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTT
CTTTTATGCAGGTGCTGGGTGTAGTCACAAATGAAATGCAGGTCGAGGCTGTCATTATCGCGGAAGAGATCAAACAACAT
AATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAACACCATTGAAATTCGTTA
CACCACGCATGAACAATTCAAACAACAAACCGCAGGAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGA
ATATCATTCTCTGTGCTGGCGTGACGTTCTGA

Upstream 100 bases:

>100_bases
CCATGTAAAACGTTTCGAGGTTGATCACATTTCCGTAACGTCACGATGGTTTTCCCAACTCAGTCAGGATTAAACTGCGG
GTCAGCGAAACGTTTCGCTG

Downstream 100 bases:

>100_bases
GGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGT
TAAATGTCTATCCGGGCCGC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAVIIAEEIKQH
NPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAGSQAVIRSGECSPYANIILCAGVTF

Sequences:

>Translated_143_residues
MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAVIIAEEIKQH
NPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAGSQAVIRSGECSPYANIILCAGVTF
>Mature_143_residues
MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAVIIAEEIKQH
NPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAGSQAVIRSGECSPYANIILCAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=97.841726618705, Blast_Score=280, Evalue=3e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15756; Mature: 15756

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLG
CCCCCCCCCEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHH
VVTNEMQVEAVIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAGS
HHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC
QAVIRSGECSPYANIILCAGVTF
HHEEECCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLG
CCCCCCCCCEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHH
VVTNEMQVEAVIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAGS
HHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC
QAVIRSGECSPYANIILCAGVTF
HHEEECCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA