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The map label for this gene is yhjC [H]

Identifier: 91213027

GI number: 91213027

Start: 3939121

End: 3940092

Strand: Direct

Name: yhjC [H]

Synonym: UTI89_C4053

Alternate gene names: 91213027

Gene position: 3939121-3940092 (Clockwise)

Preceding gene: 91213025

Following gene: 91213028

Centisome position: 77.76

GC content: 51.75

Gene sequence:

>972_bases
ATGTTAGAAAAAACAATAAACAATGCGATATGCGCGCTACTGTTTCGTTGTGAACAACAATCGGTCAAAGAAATGGATAA
AATTCACGCAATGCAGTTGTTCATCAAAGTCGCGGAGCTGGAAAGTTTTTCCCGCGCGGCGGATTTCTTTGCTTTGCCAA
AGGGAAGTGTTTCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTC
AAACTCACGCCAGAAGGCATAACCTATTATCAACGGGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT
TCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGTCAGGAATCGCGAAAAGCCTGTTACTGCCGC
GCTTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGTAGATATTCTTCAT
GATGGTTTTGATTGCGTGATACGCACTGGCGCATTACCGGAAGATGGCGTTATCGCCCGTTCTCTCGGCAAACTGACCAT
GGTCAACTGTGCCAGTCCACACTATCTGACGCGCTTTGGTTATCCGCAAAGCCCCGATGATCTGACTTCACACGCAATAG
TGCGTTATACACCGCACCTGGGTGTACATCCGTTAGGTTTTGAGGTTGCCAGCGTTAATGGCGTCCAGTGGTTTAAGTCT
GGCGGCATGTTGACGGTAAACAGTAGCGAAAACTATCTCGCCGCCGGTATTGCCGGTCTGGGGATTATTCAGATCCCGCG
CATTGCCGTGCGCGAAGCCCTGCGTGCCGGGCGGCTTATTGAAGTGTTGCCTGGCTACCGTGCCGAGCCGCTGTCCCTTT
CACTGGTTTATCCGCAGCGTCGGGAGCTTTCCCGGCGTGTAAACCTGTTTATGCAGTGGCTGGCTGGCGTAATGAAAGAG
CACCTGGACTGA

Upstream 100 bases:

>100_bases
CTGTTTAAGGGAATTCACCTTTCTCATAAAGCTATTCCTCCCTTTTCCTGCTGAGAAATCGCCACATTCATCATGACAAC
ATTGTGAAACCCGGCATTAG

Downstream 100 bases:

>100_bases
CCGACTATACTTTTTAAGAATAACCACGACAGAAGGACAAAAGAGCGGATGACGCAGGAAAACGAGATCAAACGTCCCAC
CCAGGATCTGGAGCACGAGC

Product: transcriptional regulator YhjC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Sequences:

>Translated_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD
>Mature_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=97.9933110367893, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.1036789297659, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=28.6689419795222, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.0141843971631, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.0969899665552, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=28.4280936454849, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789173, Length=301, Percent_Identity=27.2425249169435, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=24.822695035461, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=30.4597701149425, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.5589225589226, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=30.3448275862069, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36000; Mature: 36000

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCHHHH
SLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
HHCCEEEEECCCCCHHHHCCCCCCCCHHHHCEEEEECCCCCCCCCCEEEEECCCCHHCCC
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCEEEHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCHHHH
SLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
HHCCEEEEECCCCCHHHHCCCCCCCCHHHHCEEEEECCCCCCCCCCEEEEECCCCHHCCC
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCEEEHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]