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The map label for this gene is ygcN [H]

Identifier: 91212127

GI number: 91212127

Start: 3045391

End: 3046692

Strand: Direct

Name: ygcN [H]

Synonym: UTI89_C3130

Alternate gene names: 91212127

Gene position: 3045391-3046692 (Clockwise)

Preceding gene: 91212126

Following gene: 91212128

Centisome position: 60.12

GC content: 55.61

Gene sequence:

>1302_bases
GTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCTGGCAC
CGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTCTGTTACTGGAACGAGCGGAGATTCCCGGCAGCAAAAATC
TTTCCGGCGGGCGGCTATACACCCATGCGCTCGCGGAACTCCTCCCGCAATTTCACCTGACCGCGCCCCTTGAACGACGC
ATCACTCACGAAAGTCTTTCTCTGTTAACGCCAGATGGCGCAACGACGTTTTCCAGCTTACAGCCCGGCGGTGAATCCTG
GAGTGTATTACGTGCACGATTCGATCCGTGGCTGGTTGCCGAAGCCGAAAAAGAAGGTGTCGAATGCATCCCCGGTGCGA
CGGTAGATGCACTGTATGAAGAAAACGGCAGGGTGTGTGGTGTCATTTGTGGTGACGATATTCTTCGCGCCCGTTATGTG
GTGCTGGCAGAAGGTGCCAACAGCGTCCTCGCGGAACGCCACGGGTTAGTGACTCGTCCTGCTGGCGAAGCGATGGCATT
GGGGATCAAAGAAGTGCTGACGCTGGAACCATCCGCTATTGAAGAACGTTTTCATCTGGAGAATAACGAAGGCGCAGCGT
TGTTGTTCAGCGGCGGGATCTGTGATGACTTACCCGGCGGCGCATTTCTTTATACTAATCAACAAACGCTCTCGTTAGGG
ATTGTTTGCCCGCTCTCCTCCCTTACGCAAAGTCGTGTTCCGGCAAGCGAGCTGCTGGCTCGCTTTAAAACGCATCCGGC
AGTGCGCCCGCTTATCAAAAACACGGAATCACTGGAGTATGGTGCGCATCTGGTGCCAGAAGGTGGCCTGCGCAGTATGC
CGGTGCAATACGCCGGTAACGGCTGGCTGCTGGTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGC
GGTATGGATATGGCGCTAACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAA
TCTGTTTCCGCTTTATCATCACAACGTAGAGCGCAGCCTGCTGTGGGATGTTCTACAGCGTTATCAGCATGTTCCGGCGC
TTTTGCAACGCCCTGGCTGGTATCGGGTGTGGTCTGGGTTAATGCAGGATATTTCCCGTGATTTATGGGATCAGGGGAAT
ACACCTGTTCCACCGCTGCGCCAGTTGCTCTGGCGTCATTTACGTCGTCACGGCTTGTGGCATCTGACGGGCGATGTTAT
CAAGAGTCTGCGATGTCTGTAG

Upstream 100 bases:

>100_bases
CGGTGATGGTAAAAGAAACCTGCACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCC
TTAAGTAACGCTATGTTAGG

Downstream 100 bases:

>100_bases
CCCGTAATCTCTGGCGCGCTGCCGATGCGCCGCACATTGTTCCAGCTGACTCCGTTGAGCGCCAGACGGCACAACGGTTG
ATTAACGCCTGTCCAGCAGG

Product: electron transfer flavoprotein-quinone oxidoreductase ygcN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLTLEPSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLRSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRVWSGLMQDISRDLWDQGN
TPVPPLRQLLWRHLRRHGLWHLTGDVIKSLRCL

Sequences:

>Translated_433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLTLEPSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLRSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRVWSGLMQDISRDLWDQGN
TPVPPLRQLLWRHLRRHGLWHLTGDVIKSLRCL
>Mature_433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLTLEPSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLRSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRVWSGLMQDISRDLWDQGN
TPVPPLRQLLWRHLRRHGLWHLTGDVIKSLRCL

Specific function: Probably accepts electrons from ygcQ/ygcR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=408, Percent_Identity=25, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082155, Length=423, Percent_Identity=96.2174940898345, Blast_Score=801, Evalue=0.0,
Organism=Escherichia coli, GI1787991, Length=428, Percent_Identity=42.2897196261682, Blast_Score=339, Evalue=2e-94,
Organism=Escherichia coli, GI1786227, Length=428, Percent_Identity=40.8878504672897, Blast_Score=327, Evalue=8e-91,
Organism=Caenorhabditis elegans, GI25144720, Length=424, Percent_Identity=25.9433962264151, Blast_Score=105, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6324932, Length=367, Percent_Identity=26.9754768392371, Blast_Score=89, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24652256, Length=413, Percent_Identity=26.634382566586, Blast_Score=102, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.5.5.-

Molecular weight: Translated: 47306; Mature: 47306

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLY
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHEEEEEHHCCCCCCCCCCCHHH
THALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVA
HHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEE
EAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRP
ECCCCCCEECCCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECC
AGEAMALGIKEVLTLEPSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
CCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEE
IVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLRSMPVQYAGN
EECCHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCEEECCC
GWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSL
CEEEEHHHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHH
LWDVLQRYQHVPALLQRPGWYRVWSGLMQDISRDLWDQGNTPVPPLRQLLWRHLRRHGLW
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCE
HLTGDVIKSLRCL
EECHHHHHHHCCC
>Mature Secondary Structure
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLY
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHEEEEEHHCCCCCCCCCCCHHH
THALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVA
HHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEE
EAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRP
ECCCCCCEECCCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECC
AGEAMALGIKEVLTLEPSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
CCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEE
IVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLRSMPVQYAGN
EECCHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCEEECCC
GWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSL
CEEEEHHHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHH
LWDVLQRYQHVPALLQRPGWYRVWSGLMQDISRDLWDQGNTPVPPLRQLLWRHLRRHGLW
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCE
HLTGDVIKSLRCL
EECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]