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The map label for this gene is ymfK

Identifier: 91212005

GI number: 91212005

Start: 2935003

End: 2935677

Strand: Direct

Name: ymfK

Synonym: UTI89_C3004

Alternate gene names: 91212005

Gene position: 2935003-2935677 (Clockwise)

Preceding gene: 91211979

Following gene: 91212007

Centisome position: 57.94

GC content: 44.74

Gene sequence:

>675_bases
ATGAAAACAATCCATGACATCCGGCGGTCTAACGCCAGAAAACTGAGAGATGGTGTTGGCGGGAATTCTTCCTTTGCCAC
TATGATTGATCGCGAGCCAACCCAGACCAGCAGGTTTATGGGAGATGGTGCTACTAAAAATATCGGTGACAGCATGGCAC
GACACATCGAAAAATGTTTCGACCTGCCTGTCGGATGGCTCGATCAAGAACACCAGACAACGAACATCACAAAAAAACCT
GATGTTTCAATCACTAATAAACAAATCACATTAGTCCCTGTCATATCATGGGTACAGGCCGGAGCATGGAAAGAAGTTGG
ATATTCTGAGGTTGATTTGAGCACAGCAGAAACGTATCCCTGCCCTGTACCCTGTGGGGAAATGACTTATATCTTGCGGG
TGATAGGTGATTCAATGATTGATGAGTACCGCCCGGGAGACATGATTTTTGTCGATCCTGAAGTACCTGCCTGCCACGGT
GACGACGTTATTGCATTGATGCACGATACAGGTGAAACCACCTTCAAAAGGTTGATAGAAGATGGGACACAGCGTTATCT
CAAAGCGTTAAACCCAAACTGGCCTGAGCCTTACATTAAGATCAACGGTAATTGCTCTATAATTGGTACTGTGATTTTCT
CAGGAAAACCAAGAAGATACAAAATCAAAGCCTAA

Upstream 100 bases:

>100_bases
ACGCTTTCATACAATGTGTACCTCCGGTGTACATATTACATGATTGAAATGAACCTTCAAGATACTTGTACCTTAACGGT
ACAAGGGTTTTAATTTCGTT

Downstream 100 bases:

>100_bases
TCAATGTTTATGAACCTGCTTCGGCAGGTTTTTTTATACTTGACAATGTACCTTTGAGATACATAATGTACCCAAGAGAA
ACAACAAACAGGCAGGACGC

Product: putative phage repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKP
DVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA

Sequences:

>Translated_224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKP
DVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
>Mature_224_residues
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKP
DVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
DDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787391, Length=224, Percent_Identity=100, Blast_Score=469, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMFK_ECOLI (P75974)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F64859
- RefSeq:   AP_001771.1
- RefSeq:   NP_415663.1
- ProteinModelPortal:   P75974
- SMR:   P75974
- DIP:   DIP-12721N
- STRING:   P75974
- MEROPS:   S24.002
- EnsemblBacteria:   EBESCT00000002217
- EnsemblBacteria:   EBESCT00000015688
- GeneID:   945719
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1131
- KEGG:   eco:b1145
- EchoBASE:   EB3997
- EcoGene:   EG14249
- eggNOG:   COG1974
- GeneTree:   EBGT00050000009169
- HOGENOM:   HBG637272
- OMA:   DEEATIC
- ProtClustDB:   CLSK562605
- BioCyc:   EcoCyc:G6589-MONOMER
- Genevestigator:   P75974
- GO:   GO:0006350
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056
- Gene3D:   G3DSA:2.10.109.10

Pfam domain/function: PF00717 Peptidase_S24; SSF51306 Pept_S24_S26_C

EC number: NA

Molecular weight: Translated: 25095; Mature: 25095

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
DLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYP
CCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEHHHHHHHCCCHHHCCCCEECCCCCCCCC
CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIE
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
HHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEECCCCCEEEECC
>Mature Secondary Structure
MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCF
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
DLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYP
CCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEHHHHHHHCCCHHHCCCCEECCCCCCCCC
CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIE
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHH
DGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
HHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503