Definition Saccharophagus degradans 2-40 chromosome, complete genome.
Accession NC_007912
Length 5,057,531

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Identifier: 90020590

GI number:

Start: 1220113

End: 1224063

Strand: Direct

Name: Not Available

Synonym: Sde_0943

Alternate gene names: NA

Gene position: NA

Preceding gene: 90020589

Following gene: 90020591

Centisome position: NA

GC content: NA

Gene sequence:

>3951_bases
ATGAGAAATAAATTAGGCTCAATGTTAAAAATGAGCGCAGCCATTGGCGGTTTAGTTGCAGCGGGTTCCGCTGTTGCAGG
CCCAGTTGGTTTCGCAAGTTTAAACGGCGGCACTACCGGCGGCGCGGGCGGGCAAGTTGTATATGCTAGCACCGGTGCTG
AAATTAACCAGGCTATGTGTAATCGCGCAAGCGACGATACACCGCTAATTATTTATGTGACGGGTACCATTAACCACGGT
AACACCGCCAAGTATTCTGGTAGCTGCGATACCACTGCAGATGAAATTCAGTTTAAAGGTGTAAAAAATATATCGTTGAT
AGGAACGGGCAGCGGTGCTGTGTTCGATCAAATCGGTATTCACCTACGCGATACCTCGAATATTATTTTGCAAAATTTGC
ATATTAAAAACGTTAAGAAGTCTGGTTCGCCTACTTCGAATGGCGGTGACGCTATTGGTATGGAATCTGGCGTATACAAT
GTGTGGGTAGACCACTGTGAGCTAGAAGCTTCAGGCGGTGAAAGTGATGGATATGATTCATTGCTAGATATGAAAGCCAC
CACGCAGTATGTAACGGTTTCTTACACTTACTATCACGATTCTGGTCGCGGTGGTTTAATGGGGTCTAGTGATAGCGACG
ATACCAATACCTTCGTCACCTTCCACCACAACTACTACGAAAATATGGATTCGCGCTTGCCGTTACTGCGTCACGGTACA
GCTCATGCATTTAACAACTACTATAATGGTATTGCTAAATCTGGCATGAACCCACGTATAGGTGGGCAAATAAAAGCGGA
AAACAATTACTTCGAAAATGCGCACAACCCAATTGGTACTTTTTATACAGACGATATGGGTTACTGGGACTTACGCGGCA
ATATATTTGGCAGTAACGTAACGTGGGCGTCTGCGGATGATGAAACCCCTGCAGGCCCGAACCCAACATCCACTACGTCT
ATTCATATTTCTTACCCCTATGATCTAGATGACGCTGCTTGTGTGCCTGATATTGTAAAATCCACAGCAGGTGTGGGTAC
TGGCCTAGCGGTTTCAGACGGAAGCTGCACCATAACAACGCCACCTTCAACGAGTTCGTCTAGCTCCAGTTCTAGCTCAA
CCTCGTCGACTGGTTCGAGTTCGTCTTCAAGCTCTTCCTCTTCAAGCAGCTCTAGCTCCAATGGCGGCAGCTTAGTATTA
GGTAACAACCTTTCAATTGGTGCTGGCTCTGATGGTAGTAGCAAGGGAGCAGGTTCGTACGGCAATGTGCGCGATGGCGA
TGTAAGTAGCTATTGGGCGCCGAGTGGCAGTACTGGTCGTGTTTCAATTAAATGGAGCGGCAGCCAAACTGTTAACGCTA
TTGTTATTAAAGAAGCGGCAGGCTATGAAGGTAATATTAGTGGTTGGCAAGTAACTGATAACGATACCGGTGCAGTATTG
GCTGCTGGCTCAAGCGTAGGCACAATTACGTTTGATGCGGTAACGACTAGCAAGATCAATTTCGAAATTACTTCTTCTAA
CGGTACACCAACGGTAGCGGAATTCGAAACATATAATGCTACAGGTTCTAGCTCTTCAAGCAGCTCGAGTTCTTCTAGCT
CTTCATCAAGTAGCTCGTCTAGTTCTTCATCGAGCAGTTCGTCTAGTAGTTCTACAGGCGGCACCGCTACTTTAAGTACA
ACGGTTTCTGGCGATCAAGTAACGTTGAATTGGAGCGTAAATAATGCAACCGTAACTGGTCAGCAAATTTATCGCGATGT
GGATTCAGACCCAGCTGGCCGTGTGCGCATTGCATCCGGTGTAACTGGAAATACTTACACAGATACCGGTTTGGCTAACG
GAACTTATTACTACTGGGTAAAAGTAACCGATTCAAACTCAGCTACAATTAATTCCAACTACTCAGAAGCGCAAGTGAAT
GTTTATACAACATCTACTACAACGTTTGAAGAGGATGCGGGTTATTGCTCGGTAGACGGTTCAGTAGATAGCAATAACAG
TGGCTTTGCTGGCAGTGGTTTTGCTAATACCGATAATGCTTCGGGTAATGGCGTAAACTACGCGGTAAGCGTACCCGTTG
CTGGTGTGTACACGCTGCAAGTGCGTTTTGCTAATGGCTCAAGTGCACGTCCTGCTGATGTGTTAGTGAACTATGGTAAC
GCCGGTGTATTTGATCTGCCTAGCACAGGTTCTTGGACCAGCTGGAGCAACTCAAACGAAATTAGCGTTAACTTAGTTGC
TGGCAATAATATTATTCGTTTAGAGGCTACCACGTCTGGCGGCTTGGCGAATATTGATAGCCTATCTGTAACGGGTGTAG
AGCCTTCTGCAGGTGACTGTAACGGTAGTGTTGGTTCTAGCAGTTCTAGTTCTTCCAGCTCTTCTACTTCTAGCACCAGT
TCATCTAGCACTAGCTCTGGTGGCAGCTCTACTAGCTCAAGCTCAACGTCTAGCTCATCTACAAGCTCTACATCTAGTAG
TTCAACCAGCTCTAGCAGCACGTCTTCTACCTCAAGCTCTTCGGGCGGTGGTACGGCAAGTTGTGAGCAGTTGATTAACG
ATCCAAGTGTTAACTGGGATGAGTCTGCACTGGCTTCAGAGCAAGAAATTGTAGCCTGTTTGGCTCAGTCTCTAGGTAGC
CCTGTTGGCTTTGGGGAAGGTACTACCGGTGGTTACGATCCAAGTGGCGGCAGCAACCTTGTTGTTATTAAAAAGAACAT
AGGTATTTCTGTTGAGCAACAAATTTTGGATGCTATAAGCACCGAAAACCACAACTGGATTGTGTTCGACAAAGATGATT
TTGCTGCGCGCACTGCGGTAGCGATGTATCGCTTAGATTGTGACAATGCCGATGTGCGTTCAGCATTGGGTGGCGCAAGT
GCTGCACAATGTCGCGATCATATAGCTTGGTGTTCTGCTAATGGTATTTCTGACGAGCATGACTGTGAAAATGAATTCTT
TAACAACCGTTTAAATGATTCAGATTTGCCAATCCGCAATCAAATGATTCAGTCAAACACTACCATTGATGGTCGTGGTG
CAAACGCATACTTCTTCTTTAATGGTTTCTCCATTGGTAAAGATAGCAGTGGTGCAAGCTTGTACGCAGCGCAAAATGTG
ATTGTAACGAATAACGAGTTTATTGGTGCCGGTCACACTGAAGATCACGATCTAGACCCAGATATGATTCGATCTACTGG
CGAATCGAACAAAATTTGGATTCACCAAAACACGTTCGACCATACTGGTGATTCTGCGTTTGACGTAAAGGTGGGTGCTT
ACGATATAACAATATCATTCAATAAGTTGGTGAACGTGAAGCGTGCTGCGCTACATGGTTCAAGTGATAGCCGAGCAATT
AACTCGCAAATCACAACCACTATGCACAACAACCTGTTCTATACTTCAGATGATCAATACGCGCTAAGTACCTACGACAC
TTTGCGTCGTGTACCGCTAATGCGTCGCGGTCAATCACACATGTTTAACAACGTTTTCTACGGTTACCGTAAAGATATTC
TAAGCGTGCGTGTTGGCGGTCGTATCGCCTTTGAAGATAACATTATTTTGAATAAAGAAAGCAGCTCTACCCCAGGTGAT
GGCCTGAAGAAAGGCGACGACATGGAATACTATGTTGAAACCTTGTTGCGCGACTTCCGTGAGGGTGGGTTAGAAATTAG
CGGTAGCTATGTATCGTTTGCAGATAGCGCTTGTAATTCCTATGGCGCATCGGGTGACTTAACCGCATCGCATGGTGCTA
CGCCAGATATGTTTGATGATTACAGCTCTGCATCTAAAAATACTATATCAGCCAATCGCTTTGTTGCTGGCGATGACTTA
ACTGACTATGTATTTGCTACTGCAGGTAAGGGCGGTAAAGCGCCTTATGTTTCCACCTTTACTGCTGGGCAAAATAGCCT
TATTTCACAGGCTAACCCAGTTTGTCAGTAG

Upstream 100 bases:

>100_bases
TATACACGGCGCCTATTTAAAGTAAGCAGTAATGGCGTTAGGAGATGGGATTTAAACTGCAGTCATTCCAACAATAAACT
ATAAAAACGGGAAGCTAATA

Downstream 100 bases:

>100_bases
TGGTAGTTACTAGTAGCGCGCTCTCTATAGAGGGCGTTCAATTGAAGGTTGCTCTTAGGGTTTTAATCTAAGGGTGATTA
AATGAAGGGGCTGAAGTTTT

Product: 30S ribosomal protein S5

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1316_residues
MRNKLGSMLKMSAAIGGLVAAGSAVAGPVGFASLNGGTTGGAGGQVVYASTGAEINQAMCNRASDDTPLIIYVTGTINHG
NTAKYSGSCDTTADEIQFKGVKNISLIGTGSGAVFDQIGIHLRDTSNIILQNLHIKNVKKSGSPTSNGGDAIGMESGVYN
VWVDHCELEASGGESDGYDSLLDMKATTQYVTVSYTYYHDSGRGGLMGSSDSDDTNTFVTFHHNYYENMDSRLPLLRHGT
AHAFNNYYNGIAKSGMNPRIGGQIKAENNYFENAHNPIGTFYTDDMGYWDLRGNIFGSNVTWASADDETPAGPNPTSTTS
IHISYPYDLDDAACVPDIVKSTAGVGTGLAVSDGSCTITTPPSTSSSSSSSSSTSSTGSSSSSSSSSSSSSSSNGGSLVL
GNNLSIGAGSDGSSKGAGSYGNVRDGDVSSYWAPSGSTGRVSIKWSGSQTVNAIVIKEAAGYEGNISGWQVTDNDTGAVL
AAGSSVGTITFDAVTTSKINFEITSSNGTPTVAEFETYNATGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTGGTATLST
TVSGDQVTLNWSVNNATVTGQQIYRDVDSDPAGRVRIASGVTGNTYTDTGLANGTYYYWVKVTDSNSATINSNYSEAQVN
VYTTSTTTFEEDAGYCSVDGSVDSNNSGFAGSGFANTDNASGNGVNYAVSVPVAGVYTLQVRFANGSSARPADVLVNYGN
AGVFDLPSTGSWTSWSNSNEISVNLVAGNNIIRLEATTSGGLANIDSLSVTGVEPSAGDCNGSVGSSSSSSSSSSTSSTS
SSSTSSGGSSTSSSSTSSSSTSSTSSSSTSSSSTSSTSSSSGGGTASCEQLINDPSVNWDESALASEQEIVACLAQSLGS
PVGFGEGTTGGYDPSGGSNLVVIKKNIGISVEQQILDAISTENHNWIVFDKDDFAARTAVAMYRLDCDNADVRSALGGAS
AAQCRDHIAWCSANGISDEHDCENEFFNNRLNDSDLPIRNQMIQSNTTIDGRGANAYFFFNGFSIGKDSSGASLYAAQNV
IVTNNEFIGAGHTEDHDLDPDMIRSTGESNKIWIHQNTFDHTGDSAFDVKVGAYDITISFNKLVNVKRAALHGSSDSRAI
NSQITTTMHNNLFYTSDDQYALSTYDTLRRVPLMRRGQSHMFNNVFYGYRKDILSVRVGGRIAFEDNIILNKESSSTPGD
GLKKGDDMEYYVETLLRDFREGGLEISGSYVSFADSACNSYGASGDLTASHGATPDMFDDYSSASKNTISANRFVAGDDL
TDYVFATAGKGGKAPYVSTFTAGQNSLISQANPVCQ

Sequences:
NA

Specific function: NA

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA