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The map label for this gene is xerD [C]

Identifier: 89885937

GI number: 89885937

Start: 208382

End: 209071

Strand: Reverse

Name: xerD [C]

Synonym: Rfer_4451

Alternate gene names: 89885937

Gene position: 209071-208382 (Counterclockwise)

Preceding gene: 89885938

Following gene: 89885936

Centisome position: 81.21

GC content: 58.12

Gene sequence:

>690_bases
ATGCAAAAACAGAAGAGAGCACTCCGTCTTGATGGTGGGCAGTTCACCAGGCTAATCAAAATTACCAGAGCTACGTCGCG
TTACGCCGACCGCGATGTGCTAGTGCTCATGCTTGGACATCACACCGGCATGCGCGTGACAGAAATCTCTCGAATCACCG
TGGCAGATGTGCTGCACCCTTCCGGCAAGCTGCGTCAAGAAGTAAGCCTGCGCGAAGCCGTCACCAAGGGTTGCCGCCAG
CGCTGCGCATACCTATCCAGTCGAGCACTGATTGAAGCCCTGGAGGCCTATTTGGCGTACCGGCAGGCCCATGGGATCGG
CACTGAATTGGGCGACACGCGGTATCGCGGTCTACTGCCCCACCAGCCGCTGATTTTCGGTGGACGGGGTGCCGCCCTAA
GCCAGAACACCAAACGGCGTACCCTGGAGAATGGGGAGCGCCGGGACTACAAGGCGTGCGACTCGCTCCAGAGTCACATC
ACCAGGCTGTACAAGCGTGCAGGCATCAAGGGCTCAAGCCATTCTGGGCGACGTGGCTTTGCGGGTAAGGTGTTGGCCAG
CACTGGCGATATGGAGACAGTTCGTGTGCTTCTGGGTCATCAGTCCCTGGACTGCTCGCAAAGGTACGTCGATGTGAGCC
CGGCCATCCTCCAAGAAATGTTTGCCAGCGCAATTGCGGATAATTTGTAG

Upstream 100 bases:

>100_bases
TTTCCTTTATCGATAAGCCTGGCGCGGTTTATGATCGCAAAAGAGGCCCGACGATTCTCTCTCTGCAATTCACTACCAGC
GTCGAATTTCAGAGGTCAAA

Downstream 100 bases:

>100_bases
TTAGACGCGCTACACGCTACAATCAACTAATATGATAAAGACTTTCCGGCACAAGGGATTGGAACGCTTTTTCCGTGAAG
GCACCAAGGCGGGCATCCAA

Product: phage integrase

Products: NA

Alternate protein names: Site-Specific Recombinase; Phage Integrase; Integrase; Recombinase Protein; Phage Integrase Family Protein

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MQKQKRALRLDGGQFTRLIKITRATSRYADRDVLVLMLGHHTGMRVTEISRITVADVLHPSGKLRQEVSLREAVTKGCRQ
RCAYLSSRALIEALEAYLAYRQAHGIGTELGDTRYRGLLPHQPLIFGGRGAALSQNTKRRTLENGERRDYKACDSLQSHI
TRLYKRAGIKGSSHSGRRGFAGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMFASAIADNL

Sequences:

>Translated_229_residues
MQKQKRALRLDGGQFTRLIKITRATSRYADRDVLVLMLGHHTGMRVTEISRITVADVLHPSGKLRQEVSLREAVTKGCRQ
RCAYLSSRALIEALEAYLAYRQAHGIGTELGDTRYRGLLPHQPLIFGGRGAALSQNTKRRTLENGERRDYKACDSLQSHI
TRLYKRAGIKGSSHSGRRGFAGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMFASAIADNL
>Mature_229_residues
MQKQKRALRLDGGQFTRLIKITRATSRYADRDVLVLMLGHHTGMRVTEISRITVADVLHPSGKLRQEVSLREAVTKGCRQ
RCAYLSSRALIEALEAYLAYRQAHGIGTELGDTRYRGLLPHQPLIFGGRGAALSQNTKRRTLENGERRDYKACDSLQSHI
TRLYKRAGIKGSSHSGRRGFAGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMFASAIADNL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25479; Mature: 25479

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKQKRALRLDGGQFTRLIKITRATSRYADRDVLVLMLGHHTGMRVTEISRITVADVLHP
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHHHCC
SGKLRQEVSLREAVTKGCRQRCAYLSSRALIEALEAYLAYRQAHGIGTELGDTRYRGLLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC
HQPLIFGGRGAALSQNTKRRTLENGERRDYKACDSLQSHITRLYKRAGIKGSSHSGRRGF
CCCEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMFASAIADNL
CCHHHHCCCCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKQKRALRLDGGQFTRLIKITRATSRYADRDVLVLMLGHHTGMRVTEISRITVADVLHP
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHHHCC
SGKLRQEVSLREAVTKGCRQRCAYLSSRALIEALEAYLAYRQAHGIGTELGDTRYRGLLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC
HQPLIFGGRGAALSQNTKRRTLENGERRDYKACDSLQSHITRLYKRAGIKGSSHSGRRGF
CCCEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMFASAIADNL
CCHHHHCCCCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA