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The map label for this gene is vapA' [H]

Identifier: 89885935

GI number: 89885935

Start: 207787

End: 208062

Strand: Reverse

Name: vapA' [H]

Synonym: Rfer_4449

Alternate gene names: 89885935

Gene position: 208062-207787 (Counterclockwise)

Preceding gene: 89885936

Following gene: 89885934

Centisome position: 80.82

GC content: 56.52

Gene sequence:

>276_bases
ATGACTCGAATGCACAATCCACCGCACCCAGGCGAAGTCCTGCGGGAATATTTGGGTGATACCACCATCACCGAAGCTGC
AATGAAGTTGGGTGTCAATCGCGTGACTTTGACCCGCATTGTGACGGGCGTATCCGGCATATCGGCTGACATGGCTTACC
GGCTCAGTGCTGCTTTTGGCACCAGTGCCGAACTGTGGGCGGGCATGCAGATGCAGTACGACCTCTGGCAAGCAGGAAAA
GTCAAACGCCCCCGGATTGAACGGATGGCGGCATGA

Upstream 100 bases:

>100_bases
TTGGGCTGTGACCGTAAACGGGAATTGGCGGATGGTCTTTGCTTTTGACGGCACTGATGCCGTGTTGGTTGATTACCGTG
ACTACCACTGAGGATTTGAA

Downstream 100 bases:

>100_bases
ACATGAGCGGTTCAGACTTGCCAACTGAAGCTGAGATAGTCAATCGCGCAATGCGAGACTATCGGCGGAATCGTGCCGAG
TACCAGAATCCCTACCCGAA

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MTRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFGTSAELWAGMQMQYDLWQAGK
VKRPRIERMAA

Sequences:

>Translated_91_residues
MTRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFGTSAELWAGMQMQYDLWQAGK
VKRPRIERMAA
>Mature_90_residues
TRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFGTSAELWAGMQMQYDLWQAGKV
KRPRIERMAA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10081; Mature: 9950

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFG
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCC
TSAELWAGMQMQYDLWQAGKVKRPRIERMAA
CCHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure 
TRMHNPPHPGEVLREYLGDTTITEAAMKLGVNRVTLTRIVTGVSGISADMAYRLSAAFG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCC
TSAELWAGMQMQYDLWQAGKVKRPRIERMAA
CCHHHHHCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]