BacMap

Definition	Chlamydophila felis Fe/C-56, complete genome.
Accession	NC_007899
Length	1,166,239

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The map label for this gene is yebM [C]

Identifier: 89898613

GI number: 89898613

Start: 952952

End: 953671

Strand: Direct

Name: yebM [C]

Synonym: CF0806

Alternate gene names: 89898613

Gene position: 952952-953671 (Clockwise)

Preceding gene: 89898612

Following gene: 89898614

Centisome position: 81.71

GC content: 40.28

Gene sequence:

>720_bases
ATGACTTTACAAATACTTGTTAAGAATCTTTCCTTTCGGTATGCACCGAAAAGTTCTTGGATTATCAATAATGTCTCCTT
CATGGTTCATGAAAGGGACTTTGTTGGCATTATAGGACCTAATGGCGGAGGGAAAACAACTCTAGTCAAGCTTATTCTAG
GACTATTAAAACCAACTTTAGGGACCCTAGAAACTTACTCTACGTGTAAAAAAGATTCCGAATTAGCTATCGGTTGGGTT
CCCCAACACTTTGCCTATGATTTTTCCTTCCCTATTTCTGTAAAAGATGTGGTTCTCTCCGGAAGGCTTTCTTTTTTACG
TTGGCATGGAAAATACTCGAAACTTGATCATGAATCTGCCGAACAAGCCCTAGAAACCGTAGATCTTCTACATCACAGGG
ATACGTGCTTTTCTTGCCTATCCGGAGGACAAATCCAGAGGGTACTGCTCGCTAGAGCTTTAGCTTCTCATCCAAAACTC
CTCATTCTTGATGAACCGACGGCAAATATTGATCCGGAAAATCAGCAGCGCATCTTACAGATTCTAACTAAGCTCAATGC
CCGTTGTACAATTCTCATGATTACCCATGATTTACATCATACAACGAGTCATTTCAACAAACTATTTTATATGAGCAGAA
CTCTCACAACTTTGACGAATACCCCAACGATATCTCAGGAGTTCTGTTGTGATTCCTTCGAAAAAAAGGCTGGTCTATGA

Upstream 100 bases:

>100_bases
TGCTTGCCGAGCGTTTTCACATGAATACGGTAAATTTAGATCCTTATGAAGAAAACGTGATAAATAATCTAAAAACCATA
GCGACGACTCTTGCTAATTT

Downstream 100 bases:

>100_bases
TTTCTTTTTTTGGTCTTATGCTACCTGCTCTACTTTTTCCCTCCCTACTTGCAGCTTTAGGAGCATCTATAGCTGGAGGA
GTCGTTGGGTCGTATATTGT

Product: ABC transporter of metals

Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTLQILVKNLSFRYAPKSSWIINNVSFMVHERDFVGIIGPNGGGKTTLVKLILGLLKPTLGTLETYSTCKKDSELAIGWV
PQHFAYDFSFPISVKDVVLSGRLSFLRWHGKYSKLDHESAEQALETVDLLHHRDTCFSCLSGGQIQRVLLARALASHPKL
LILDEPTANIDPENQQRILQILTKLNARCTILMITHDLHHTTSHFNKLFYMSRTLTTLTNTPTISQEFCCDSFEKKAGL

Sequences:

>Translated_239_residues
MTLQILVKNLSFRYAPKSSWIINNVSFMVHERDFVGIIGPNGGGKTTLVKLILGLLKPTLGTLETYSTCKKDSELAIGWV
PQHFAYDFSFPISVKDVVLSGRLSFLRWHGKYSKLDHESAEQALETVDLLHHRDTCFSCLSGGQIQRVLLARALASHPKL
LILDEPTANIDPENQQRILQILTKLNARCTILMITHDLHHTTSHFNKLFYMSRTLTTLTNTPTISQEFCCDSFEKKAGL
>Mature_238_residues
TLQILVKNLSFRYAPKSSWIINNVSFMVHERDFVGIIGPNGGGKTTLVKLILGLLKPTLGTLETYSTCKKDSELAIGWVP
QHFAYDFSFPISVKDVVLSGRLSFLRWHGKYSKLDHESAEQALETVDLLHHRDTCFSCLSGGQIQRVLLARALASHPKLL
ILDEPTANIDPENQQRILQILTKLNARCTILMITHDLHHTTSHFNKLFYMSRTLTTLTNTPTISQEFCCDSFEKKAGL

Specific function: Part of an ATP-driven transport system TC_0696/TC_0697/TC_0698 for a metal. Probably responsible for energy coupling to the transport system [H]

COG id: COG1121

COG function: function code P; ABC-type Mn/Zn transport systems, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=222, Percent_Identity=27.027027027027, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=25, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=25, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=28.2296650717703, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=28.2296650717703, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27477115, Length=200, Percent_Identity=29, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI31657092, Length=184, Percent_Identity=27.7173913043478, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=27.2251308900524, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI255708477, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI6005701, Length=180, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI21536376, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI9955970, Length=236, Percent_Identity=27.5423728813559, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI150417984, Length=200, Percent_Identity=27, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=34.8258706467662, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=32.0388349514563, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=35.2657004830918, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=29.8245614035088, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=29.0178571428571, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=34.7826086956522, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=30.9178743961353, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786975, Length=190, Percent_Identity=32.1052631578947, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787712, Length=230, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790739, Length=228, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=32.0652173913043, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786803, Length=200, Percent_Identity=28.5, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790162, Length=216, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994997, Length=219, Percent_Identity=30.1369863013699, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789891, Length=199, Percent_Identity=32.1608040201005, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787548, Length=239, Percent_Identity=25.9414225941423, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=27.2340425531915, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789032, Length=216, Percent_Identity=31.0185185185185, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786703, Length=189, Percent_Identity=30.6878306878307, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=214, Percent_Identity=26.6355140186916, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786654, Length=209, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790190, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081782, Length=197, Percent_Identity=26.9035532994924, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=29.9019607843137, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789672, Length=203, Percent_Identity=27.0935960591133, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787089, Length=188, Percent_Identity=30.8510638297872, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=27.8761061946903, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994943, Length=179, Percent_Identity=30.1675977653631, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787547, Length=250, Percent_Identity=25.6, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789991, Length=206, Percent_Identity=26.6990291262136, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787041, Length=188, Percent_Identity=25, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787105, Length=186, Percent_Identity=26.3440860215054, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788897, Length=193, Percent_Identity=21.2435233160622, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787143, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787182, Length=187, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=228, Percent_Identity=30.7017543859649, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17559834, Length=190, Percent_Identity=30.5263157894737, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193208177, Length=220, Percent_Identity=28.6363636363636, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=25.4545454545455, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555318, Length=195, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=181, Percent_Identity=28.7292817679558, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=211, Percent_Identity=27.4881516587678, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=195, Percent_Identity=25.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=195, Percent_Identity=25.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=195, Percent_Identity=25.1282051282051, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17552232, Length=241, Percent_Identity=27.3858921161826, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=207, Percent_Identity=24.1545893719807, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=207, Percent_Identity=24.1545893719807, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=207, Percent_Identity=24.1545893719807, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24650986, Length=211, Percent_Identity=30.3317535545024, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI21358185, Length=211, Percent_Identity=30.3317535545024, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24641342, Length=192, Percent_Identity=31.7708333333333, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24666092, Length=182, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221460257, Length=217, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357907, Length=209, Percent_Identity=29.1866028708134, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24649703, Length=226, Percent_Identity=26.1061946902655, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI281363262, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653245, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85726357, Length=204, Percent_Identity=29.9019607843137, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45550390, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=215, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161077321, Length=206, Percent_Identity=30.5825242718447, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI62484234, Length=237, Percent_Identity=30.379746835443, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28574150, Length=186, Percent_Identity=26.3440860215054, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007328, Length=186, Percent_Identity=26.3440860215054, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24643674, Length=195, Percent_Identity=24.1025641025641, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=240, Percent_Identity=28.3333333333333, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582012, Length=240, Percent_Identity=28.3333333333333, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24585557, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45552437, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI85725262, Length=222, Percent_Identity=27.9279279279279, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574259, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26957; Mature: 26825

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQILVKNLSFRYAPKSSWIINNVSFMVHERDFVGIIGPNGGGKTTLVKLILGLLKPTL
CCCEEEEECCCEEECCCCCEEEECEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCCHH
GTLETYSTCKKDSELAIGWVPQHFAYDFSFPISVKDVVLSGRLSFLRWHGKYSKLDHESA
HHHHHHHHHCCCCCEEEEECCHHHEEECCCCCCHHHHHHHCHHEEHHCCCCCCCCCHHHH
EQALETVDLLHHRDTCFSCLSGGQIQRVLLARALASHPKLLILDEPTANIDPENQQRILQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
ILTKLNARCTILMITHDLHHTTSHFNKLFYMSRTLTTLTNTPTISQEFCCDSFEKKAGL
HHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLQILVKNLSFRYAPKSSWIINNVSFMVHERDFVGIIGPNGGGKTTLVKLILGLLKPTL
CCEEEEECCCEEECCCCCEEEECEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCCHH
GTLETYSTCKKDSELAIGWVPQHFAYDFSFPISVKDVVLSGRLSFLRWHGKYSKLDHESA
HHHHHHHHHCCCCCEEEEECCHHHEEECCCCCCHHHHHHHCHHEEHHCCCCCCCCCHHHH
EQALETVDLLHHRDTCFSCLSGGQIQRVLLARALASHPKLLILDEPTANIDPENQQRILQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
ILTKLNARCTILMITHDLHHTTSHFNKLFYMSRTLTTLTNTPTISQEFCCDSFEKKAGL
HHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Zn (II) [Periplasm]; H2O; ATP [C]

Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]